Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   A6J44_RS03000 Genome accession   NZ_CP020418
Coordinates   432322..433509 (+) Length   395 a.a.
NCBI ID   WP_020997408.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FDAARGOS_205     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 427322..438509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J44_RS02985 (A6J44_02930) - 428242..428841 (+) 600 WP_003690128.1 DUF4390 domain-containing protein -
  A6J44_RS02990 (A6J44_02935) - 428841..430961 (+) 2121 WP_082299068.1 PAS domain-containing sensor histidine kinase -
  A6J44_RS02995 (A6J44_02940) - 430954..432231 (+) 1278 WP_003690124.1 sigma-54 dependent transcriptional regulator -
  A6J44_RS03000 (A6J44_02945) dprA 432322..433509 (+) 1188 WP_020997408.1 DNA-processing protein DprA Machinery gene
  A6J44_RS03005 (A6J44_02950) - 433535..433996 (+) 462 WP_003690120.1 DUF494 domain-containing protein -
  A6J44_RS03010 (A6J44_02955) topA 434074..436380 (+) 2307 WP_082295374.1 type I DNA topoisomerase -
  A6J44_RS03015 (A6J44_02960) - 436467..437263 (+) 797 Protein_460 IS1595 family transposase -
  A6J44_RS03025 (A6J44_02970) - 437360..438184 (+) 825 WP_082295375.1 opacity family porin -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41911.00 Da        Isoelectric Point: 6.3096

>NTDB_id=222523 A6J44_RS03000 WP_020997408.1 432322..433509(+) (dprA) [Neisseria gonorrhoeae strain FDAARGOS_205]
MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSAPAEQVAPAVRHKHALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPTVSGMASGIDT
AAHQGALEAEGGTIAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRTVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=222523 A6J44_RS03000 WP_020997408.1 432322..433509(+) (dprA) [Neisseria gonorrhoeae strain FDAARGOS_205]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCAGTTTCGGCAGCGCGCAAAATGCCTTGTCCGCACCGGCGGAACAGGTTGCCCCGGCGGTGCGGCATAAGCACGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGTCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCTACCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGCCAACAAAAACCTTGCCTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGTTCGATAGACAACCCCCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGAGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCATCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCACCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCAATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

100

100

1

  dprA Neisseria gonorrhoeae strain FA1090

99.241

100

0.992

  dprA Neisseria meningitidis strain C311

89.924

100

0.904

  dprA Neisseria meningitidis MC58

89.924

100

0.904

  dprA Vibrio cholerae strain A1552

36.709

100

0.367


Multiple sequence alignment