Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   C2H93_RS02490 Genome accession   NZ_CP026036
Coordinates   506958..507674 (+) Length   238 a.a.
NCBI ID   WP_046380854.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_16     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 501958..512674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS02475 (C2H93_02470) yfkQ 502036..503577 (-) 1542 WP_041851177.1 spore germination protein -
  C2H93_RS02480 (C2H93_02475) treP 503766..505178 (+) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  C2H93_RS02485 (C2H93_02480) treC 505249..506937 (+) 1689 WP_249852577.1 alpha,alpha-phosphotrehalase -
  C2H93_RS02490 (C2H93_02485) treR 506958..507674 (+) 717 WP_046380854.1 trehalose operon repressor Regulator
  C2H93_RS02495 (C2H93_02490) hypO 507814..508479 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27869.83 Da        Isoelectric Point: 7.1737

>NTDB_id=222452 C2H93_RS02490 WP_046380854.1 506958..507674(+) (treR) [Bacillus subtilis strain PK5_16]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=222452 C2H93_RS02490 WP_046380854.1 506958..507674(+) (treR) [Bacillus subtilis strain PK5_16]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACTTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAGATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.373

99.16

0.42

Multiple sequence alignment