Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | A6J62_RS07830 | Genome accession | NZ_CP020408 |
| Coordinates | 472947..473258 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae strain FDAARGOS_223 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 467947..478258
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J62_RS07815 (A6J62_07670) | lon | 467984..470344 (+) | 2361 | WP_001047611.1 | endopeptidase La | - |
| A6J62_RS07820 (A6J62_07675) | - | 470528..470800 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| A6J62_RS07825 (A6J62_07680) | ppiD | 470953..472812 (+) | 1860 | WP_000969331.1 | peptidylprolyl isomerase | - |
| A6J62_RS07830 (A6J62_07685) | comEA | 472947..473258 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| A6J62_RS07835 (A6J62_07690) | cmk | 473441..474118 (+) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| A6J62_RS07840 (A6J62_07695) | rpsA | 474227..475897 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| A6J62_RS07845 (A6J62_07700) | ihfB | 476185..476463 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| A6J62_RS07850 (A6J62_07705) | - | 476602..476883 (+) | 282 | WP_000691492.1 | LapA family protein | - |
| A6J62_RS07855 (A6J62_07710) | lapB | 476895..478064 (+) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=222325 A6J62_RS07830 WP_001166105.1 472947..473258(+) (comEA) [Vibrio cholerae strain FDAARGOS_223]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=222325 A6J62_RS07830 WP_001166105.1 472947..473258(+) (comEA) [Vibrio cholerae strain FDAARGOS_223]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |