Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Y_RS01660 Genome accession   NC_004088
Coordinates   368467..369990 (-) Length   507 a.a.
NCBI ID   WP_002212018.1    Uniprot ID   A0A0E1NR73
Organism   Yersinia pestis KIM10+     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 363467..374990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y_RS01640 (y0330) ytfT 364874..365893 (+) 1020 WP_002212022.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  Y_RS01645 (y0331) yjfF 365893..366885 (+) 993 WP_002212021.1 galactofuranose ABC transporter, permease protein YjfF -
  Y_RS01650 (y0332) hdfR 366872..367753 (-) 882 WP_002212020.1 HTH-type transcriptional regulator HdfR -
  Y_RS01655 (y0333) - 367872..368210 (+) 339 WP_002212019.1 DUF413 domain-containing protein -
  Y_RS01660 (y0334) comM 368467..369990 (-) 1524 WP_002212018.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Y_RS21920 (y0335) ilvL 370374..370472 (+) 99 WP_002231873.1 ilv operon leader peptide -
  Y_RS01665 (y0336) ilvG 370613..372259 (+) 1647 WP_002212017.1 acetolactate synthase 2 catalytic subunit -
  Y_RS01670 ilvM 372256..372513 (+) 258 WP_002212016.1 acetolactate synthase 2 small subunit -
  Y_RS01675 (y0337) - 372536..373462 (+) 927 WP_002212015.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54491.00 Da        Isoelectric Point: 7.6013

>NTDB_id=22211 Y_RS01660 WP_002212018.1 368467..369990(-) (comM) [Yersinia pestis KIM10+]
MSLATIHTRATLGIQAPPVAVEVHISNGLPGLILVGLPETTVKEARDRVRSALINSGFNFPAKRITVSLAPADLPKEGGR
YDLPIALAILAASEQIPADKLAHYEFLGELALSGALRRVSGAIPAALTCSEANRQLILPTANGLEIGLIPQGNSWVADHL
LAVCGFLQGENPLAQGQPFEPAPSPDNHLDLHDIIGQSQAKRALEIAAAGGHNLLLLGPPGTGKTMLATRLTGLLPPLTD
QEALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLDELPEFERRVLDSLREPLE
SGEIIISRAAAKICFPAKVQLIAAMNPSPSGHYQGVHNRTPPQQILRYLAKLSGPFLDRFDLSIEVPLLPAGMLGAQKNQ
GESSATVKQRVLQARQRQMDRAGKINTQLTSQEVAEFCYLAPEDAAFLEQVLLTLGLSVRAWHHILKVARTIADLAQEKT
IQKSHLSEALSYRCMDRLLLQLHKSLM

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=22211 Y_RS01660 WP_002212018.1 368467..369990(-) (comM) [Yersinia pestis KIM10+]
ATGTCACTGGCAACCATTCATACTCGCGCAACATTGGGCATTCAAGCCCCTCCTGTCGCGGTAGAAGTTCATATCAGCAA
TGGATTACCCGGATTGATATTGGTCGGCTTACCTGAAACAACGGTCAAAGAAGCACGGGATCGGGTTCGTAGCGCATTAA
TTAACAGCGGTTTTAATTTTCCCGCCAAGCGGATCACCGTCAGCCTGGCACCGGCAGATTTACCCAAAGAAGGCGGGCGC
TATGATCTCCCCATTGCTTTAGCCATCTTGGCCGCCTCAGAGCAGATCCCTGCGGATAAGTTAGCGCACTATGAGTTCTT
GGGTGAATTAGCCCTATCCGGCGCGTTAAGGCGCGTTAGCGGCGCAATTCCAGCAGCACTCACCTGTAGCGAAGCTAACC
GTCAGTTAATCCTTCCCACCGCTAATGGTCTTGAAATTGGTCTAATCCCACAAGGCAACTCCTGGGTCGCAGACCATTTA
TTAGCGGTATGCGGTTTCTTACAAGGTGAAAACCCCCTCGCACAGGGCCAGCCCTTCGAACCGGCCCCTTCACCGGATAA
CCACCTTGATTTACACGACATCATTGGTCAATCGCAGGCTAAACGTGCGTTAGAAATCGCGGCGGCAGGTGGTCATAACC
TGCTGTTACTCGGGCCACCAGGTACCGGTAAAACGATGCTGGCAACCCGCCTAACCGGGTTATTGCCTCCGCTGACCGAT
CAGGAGGCGTTAGAAGCAGCGGCGATCACCGGGTTGCTGCATAGCAACGCACTGCCAACACAATGGCGTTGCCGGGCCTT
TCGTGCCCCACACCATAGCGCATCGATGGCAGCGCTGATTGGCGGCGGCTCCATCCCCCGCCCCGGTGAGATATCACTGG
CCCATAACGGTGTGTTATTTCTCGATGAACTGCCTGAATTTGAACGCCGGGTACTGGATTCACTGCGCGAACCGTTGGAA
TCTGGCGAAATTATTATCTCCCGCGCGGCAGCCAAAATCTGTTTTCCAGCCAAAGTGCAACTTATCGCGGCGATGAACCC
TAGCCCCAGCGGCCACTACCAAGGCGTTCATAACCGCACACCGCCACAGCAAATTTTGCGCTATCTGGCCAAGTTGTCCG
GGCCATTTCTCGATAGATTCGATTTATCGATAGAAGTGCCATTACTGCCAGCCGGTATGCTGGGTGCGCAGAAAAATCAG
GGGGAGAGTAGCGCTACAGTCAAGCAGCGAGTGTTACAGGCCAGACAAAGGCAAATGGACCGGGCGGGGAAGATCAATAC
GCAGCTCACTAGCCAAGAGGTAGCAGAGTTTTGTTATTTAGCACCTGAGGATGCCGCGTTTCTCGAGCAGGTTTTACTGA
CACTCGGCCTGTCAGTACGTGCCTGGCACCATATTTTGAAAGTGGCGCGAACCATTGCCGATTTAGCGCAAGAAAAGACC
ATCCAAAAAAGTCATCTTTCAGAGGCGCTGAGCTATCGCTGTATGGATCGCCTGCTATTGCAGTTGCACAAAAGCCTGAT
GTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E1NR73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.834

99.803

0.637
  comM Glaesserella parasuis strain SC1401

62.722

100

0.627
  comM Vibrio cholerae strain A1552

62.55

99.014

0.619
  comM Vibrio campbellii strain DS40M4

62.351

99.014

0.617
  comM Legionella pneumophila str. Paris

51.6

98.619

0.509
  comM Legionella pneumophila strain ERS1305867

51.6

98.619

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.204

100

0.444

Multiple sequence alignment