Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SP_RS02895 Genome accession   NC_003028
Coordinates   553572..553838 (+) Length   88 a.a.
NCBI ID   WP_001808618.1    Uniprot ID   -
Organism   Streptococcus pneumoniae TIGR4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 548572..558838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP_RS02870 (SP_0580) - 548815..549324 (+) 510 WP_000619950.1 GNAT family N-acetyltransferase -
  SP_RS02875 (SP_0581) pheT 549401..551806 (+) 2406 WP_000961511.1 phenylalanine--tRNA ligase subunit beta -
  SP_RS02880 (SP_0582) - 551874..552875 (-) 1002 WP_000597970.1 endonuclease/exonuclease/phosphatase family protein -
  SP_RS11855 (SP_0583) - 553031..553446 (+) 416 Protein_547 helix-turn-helix domain-containing protein -
  SP_RS02895 (SP_0584) HI0659 553572..553838 (+) 267 WP_001808618.1 helix-turn-helix domain-containing protein Machinery gene
  SP_RS02900 (SP_0585) metE 554099..556348 (+) 2250 WP_000108201.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  SP_RS02905 (SP_0586) metF 556412..557278 (+) 867 WP_000089968.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9622.15 Da        Isoelectric Point: 4.4893

>NTDB_id=22207 SP_RS02895 WP_001808618.1 553572..553838(+) (HI0659) [Streptococcus pneumoniae TIGR4]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=22207 SP_RS02895 WP_001808618.1 553572..553838(+) (HI0659) [Streptococcus pneumoniae TIGR4]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534

Multiple sequence alignment