Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   STH12_RS15990 Genome accession   NZ_CP020373
Coordinates   3663357..3664883 (+) Length   508 a.a.
NCBI ID   WP_126168465.1    Uniprot ID   -
Organism   Shewanella khirikhana strain TH2012     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3658357..3669883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STH12_RS15970 (STH12_03212) - 3658532..3659329 (+) 798 WP_126168461.1 substrate-binding periplasmic protein -
  STH12_RS15975 (STH12_03213) - 3659426..3660235 (+) 810 WP_126168462.1 GGDEF domain-containing protein -
  STH12_RS15980 (STH12_03214) - 3660257..3662041 (-) 1785 WP_126168463.1 GGDEF domain-containing protein -
  STH12_RS15985 (STH12_03215) - 3662131..3663138 (-) 1008 WP_126168464.1 ABC transporter substrate-binding protein -
  STH12_RS15990 (STH12_03216) comM 3663357..3664883 (+) 1527 WP_126168465.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  STH12_RS15995 (STH12_03217) - 3665059..3668331 (+) 3273 WP_237158641.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -
  STH12_RS16000 (STH12_03218) - 3668328..3669842 (+) 1515 WP_126168466.1 SLC5 family protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54562.94 Da        Isoelectric Point: 7.9118

>NTDB_id=221862 STH12_RS15990 WP_126168465.1 3663357..3664883(+) (comM) [Shewanella khirikhana strain TH2012]
MAIACVATRASLGVEAPAVTVEVHLANGLPAFNLVGLPEASVKEARERVRSALVNAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASGQIPLTSLKNREFVGELALSGEVRFCSGLLPVIVAARRDGRELILPLANRADAELVDYPAIRLCSQL
VHLVAFLHGQQPLPGLEQGAEWLEEAPGAVTCLSDVIGQYQAKQALEIAAAGAHNLLMLGLPGCGKTMLASRIMGLLPPL
DYDEALEVAALHSVAGLNIKPSEFHRRPFRSPHHTCSAISLVGGGSVPKPGEISLAHRGVLFLDELPEFPRKVLDCLREP
METGEVVISRAAAKLTFASRFQLIAAMNPSPCGSAGPGSRSSPEQISRYLARLSGPFLDRFDLSIEVPPLPPGTLTQNAP
AAETTDTIARRVTAARERQLARAGKLNSELTGNELKQAGFTQQDLEFLEQSVNRLGLSVRSFHRLQRVARTIADLENSPN
VERKHLAQALGYRAMDRLLASLSQQLGR

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=221862 STH12_RS15990 WP_126168465.1 3663357..3664883(+) (comM) [Shewanella khirikhana strain TH2012]
ATGGCCATTGCCTGCGTCGCCACCCGTGCGAGCCTGGGGGTGGAAGCCCCAGCCGTTACCGTCGAGGTTCATCTGGCCAA
CGGCCTGCCTGCGTTTAATCTGGTTGGCCTGCCCGAAGCCTCGGTCAAAGAAGCCCGCGAGCGGGTGCGCAGCGCCCTGG
TCAATGCCGGATTTGAATTCCCGATGCGCCGCATCACGGTCAATCTGGCCCCAGCCGACTTACCCAAACAGGGTGGTCGT
TACGACCTGCCCATCGCCATCGGTATTCTGGCAGCCTCGGGGCAAATCCCGCTCACCAGCCTGAAAAACCGTGAATTTGT
CGGTGAACTGGCGCTGTCGGGCGAAGTACGCTTCTGCTCCGGGCTGCTGCCTGTGATTGTGGCCGCCCGCCGGGACGGCC
GCGAACTCATACTGCCGCTAGCCAACCGCGCCGATGCCGAATTGGTCGATTATCCCGCCATTCGTCTGTGCAGCCAGTTG
GTCCATCTGGTGGCCTTCCTCCACGGTCAGCAGCCCTTGCCGGGGCTGGAGCAAGGCGCCGAGTGGCTCGAAGAAGCGCC
CGGCGCCGTGACTTGCCTTAGCGATGTAATTGGCCAGTATCAGGCCAAGCAGGCGCTGGAAATAGCCGCTGCGGGCGCTC
ATAACCTCCTGATGCTTGGCTTGCCTGGCTGCGGTAAAACCATGCTTGCCAGCCGGATCATGGGCTTACTGCCGCCGCTC
GATTATGACGAAGCGCTTGAAGTGGCGGCGCTGCATTCGGTCGCCGGACTCAATATCAAGCCCAGTGAGTTTCATCGCCG
CCCCTTTCGATCGCCGCACCACACCTGCTCGGCCATCTCCCTGGTTGGCGGTGGCAGCGTGCCCAAGCCAGGGGAGATTT
CCCTCGCCCACCGGGGCGTGTTGTTTCTAGACGAGCTGCCCGAATTCCCACGCAAGGTGCTCGACTGCCTGCGCGAGCCA
ATGGAAACCGGCGAAGTGGTGATCTCCCGCGCCGCCGCCAAACTCACCTTTGCCAGCCGTTTTCAGCTGATTGCCGCCAT
GAACCCAAGCCCCTGCGGCAGCGCCGGCCCCGGCAGCCGCTCAAGTCCTGAGCAAATAAGTCGCTATCTGGCGCGGCTTT
CAGGCCCCTTCCTGGACCGCTTCGATTTGTCCATTGAAGTGCCGCCGCTGCCGCCGGGCACCCTCACCCAAAACGCCCCG
GCCGCCGAAACCACTGACACCATCGCCCGCCGGGTGACTGCTGCCCGCGAACGCCAGTTGGCGCGGGCTGGCAAGCTCAA
CAGCGAACTCACGGGAAACGAGCTGAAACAGGCTGGATTTACTCAGCAGGATCTTGAATTTCTTGAGCAAAGCGTTAACC
GGCTTGGGTTATCGGTGCGCAGCTTTCACCGCCTGCAACGGGTTGCCCGCACCATTGCCGACCTTGAAAACAGCCCCAAT
GTGGAGCGCAAACATCTGGCACAGGCGCTTGGGTATCGCGCCATGGACAGGCTGCTTGCCAGTCTGTCACAGCAGCTCGG
GCGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.213

99.803

0.561
  comM Glaesserella parasuis strain SC1401

56.126

99.606

0.559
  comM Vibrio cholerae strain A1552

55.819

99.803

0.557
  comM Vibrio campbellii strain DS40M4

55.621

99.803

0.555
  comM Legionella pneumophila str. Paris

47.992

98.031

0.47
  comM Legionella pneumophila strain ERS1305867

47.992

98.031

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.2

98.425

0.425

Multiple sequence alignment