Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B0X70_RS23530 Genome accession   NZ_CP020335
Coordinates   5472724..5474247 (+) Length   507 a.a.
NCBI ID   WP_217470516.1    Uniprot ID   -
Organism   Photorhabdus akhurstii strain 0813-124 phase II     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5467724..5479247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0X70_RS23510 (B0X70_23670) - 5468993..5469919 (-) 927 WP_217470515.1 branched-chain amino acid transaminase -
  B0X70_RS23515 (B0X70_23675) ilvM 5469943..5470200 (-) 258 WP_036779619.1 acetolactate synthase 2 small subunit -
  B0X70_RS23520 (B0X70_23680) ilvG 5470197..5471842 (-) 1646 Protein_4632 acetolactate synthase 2 catalytic subunit -
  B0X70_RS23525 (B0X70_23685) ilvL 5471981..5472079 (-) 99 WP_071647081.1 ilv operon leader peptide -
  B0X70_RS23530 (B0X70_23690) comM 5472724..5474247 (+) 1524 WP_217470516.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B0X70_RS23535 (B0X70_23695) - 5474294..5474632 (-) 339 WP_036779611.1 DUF413 domain-containing protein -
  B0X70_RS23540 (B0X70_23700) hdfR 5474758..5475594 (+) 837 WP_217470517.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55389.08 Da        Isoelectric Point: 8.3664

>NTDB_id=221448 B0X70_RS23530 WP_217470516.1 5472724..5474247(+) (comM) [Photorhabdus akhurstii strain 0813-124 phase II]
MALAVIYTRATIGIHAPIVTVEAHISNGLPGLTLVGLPETAVKEARDRVRSALINSGFTYPSKRITVNLAPADLPKEGGR
YDLPIAIAILAASEQIPTSTLNHYEFLGELALSGGLRKVNGAISAALSAGEAGRQLILPTENAIELAILSQNETLMTEHL
LHICHFLQGEKQLLTTTIQHKPSTEPSQPDLQDIIGQEQAKRALEITAAGGHNLLLLGPPGTGKTMLASRLCSLLPPLTN
KEALEVAAINSLVDTYLPPEQWHTRPFRAPHHSSSMAALVGGGGLPKPGEISLAHNGVLFLDELPEFERRVLDALREPLE
SGEIIISRARAKVCFPAQVQLIAAMNPSPTGYHQGIHNRSNPQQILRYLAKLSGPFLDRFDLSIEVPLLPIGTLSSPFRS
SESSKDVRLRVLAAREIQLKRCGKINAHLNSKETEAFCKLKPNDAVFLEQTLMKLGLSIRAWHRILRTSRTLADLEEKKE
IEKPHIMEALSYRSMDRLLIQLQKQSG

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=221448 B0X70_RS23530 WP_217470516.1 5472724..5474247(+) (comM) [Photorhabdus akhurstii strain 0813-124 phase II]
ATGGCCCTCGCTGTTATTTATACCAGAGCGACTATAGGTATTCATGCCCCAATTGTTACTGTTGAAGCCCATATTAGTAA
TGGCTTACCTGGATTAACTTTGGTTGGTTTGCCTGAAACAGCCGTAAAAGAAGCAAGAGATCGTGTCAGAAGTGCGTTGA
TCAACAGCGGGTTTACCTATCCGTCTAAAAGAATCACCGTCAATCTTGCTCCCGCAGATCTTCCCAAGGAAGGTGGTCGT
TATGATTTGCCGATCGCTATCGCTATTCTGGCCGCTTCAGAGCAAATACCTACCAGTACTCTAAATCATTATGAGTTTCT
TGGTGAACTCGCTCTATCCGGTGGTCTACGAAAAGTTAACGGCGCAATTTCAGCCGCTCTCAGCGCAGGAGAAGCAGGAA
GGCAACTTATTCTACCAACAGAAAACGCAATAGAGCTGGCAATCTTATCTCAGAATGAGACGTTAATGACAGAACACCTC
TTACATATCTGCCACTTCCTTCAGGGAGAAAAACAACTACTGACAACAACGATCCAACATAAGCCCTCAACAGAGCCATC
ACAGCCAGATCTTCAGGATATTATTGGTCAGGAACAAGCAAAACGCGCACTGGAAATCACAGCAGCAGGCGGACATAATC
TTTTACTACTTGGCCCACCAGGGACAGGGAAAACAATGTTGGCAAGCCGTCTATGTAGTTTATTACCGCCATTAACAAAC
AAAGAAGCCCTTGAGGTAGCCGCTATCAATAGCCTGGTGGATACCTACCTTCCACCAGAACAATGGCATACACGCCCATT
CAGAGCGCCTCATCACAGCTCTTCAATGGCAGCACTGGTTGGTGGTGGTGGGCTGCCAAAACCTGGTGAAATTTCACTTG
CTCACAATGGGGTGCTATTTCTAGATGAACTACCTGAATTTGAACGTAGAGTCCTTGATGCTCTCAGAGAACCACTGGAA
TCAGGGGAAATAATTATCTCCCGAGCCAGAGCAAAAGTTTGTTTTCCTGCTCAAGTTCAATTGATAGCGGCAATGAATCC
CAGCCCGACAGGCTACCATCAGGGAATTCACAATCGAAGTAATCCTCAGCAAATACTTCGATACCTGGCAAAACTTTCTG
GACCTTTTTTGGATCGTTTTGATCTCTCAATTGAAGTTCCTCTGTTACCCATTGGAACATTGAGTAGCCCTTTTAGATCA
AGCGAAAGCAGTAAAGATGTAAGATTAAGAGTGCTGGCAGCGCGAGAAATACAATTGAAACGCTGTGGAAAGATTAATGC
TCATCTGAATAGTAAAGAGACAGAGGCATTTTGTAAGCTCAAACCTAACGATGCTGTATTTCTAGAACAAACGCTAATGA
AATTAGGGCTTTCAATCCGAGCATGGCACCGAATTCTGAGAACATCCCGGACACTTGCCGACTTAGAAGAAAAAAAAGAG
ATAGAAAAACCACATATCATGGAAGCCTTAAGCTACCGCAGTATGGACAGGCTATTAATACAATTACAAAAACAATCGGG
TTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.241

99.803

0.631
  comM Glaesserella parasuis strain SC1401

62.622

100

0.631
  comM Vibrio cholerae strain A1552

61.811

100

0.619
  comM Vibrio campbellii strain DS40M4

61.265

99.803

0.611
  comM Legionella pneumophila str. Paris

50.394

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.394

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.838

99.803

0.467

Multiple sequence alignment