Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B5M06_RS05220 Genome accession   NZ_CP020121
Coordinates   1104557..1106092 (+) Length   511 a.a.
NCBI ID   WP_054067955.1    Uniprot ID   -
Organism   Comamonas kerstersii strain 8943     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1099557..1111092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5M06_RS05200 (B5M06_05200) - 1100544..1101308 (-) 765 WP_054067958.1 YoaK family protein -
  B5M06_RS05205 (B5M06_05205) glcE 1101320..1102447 (-) 1128 WP_080025173.1 glycolate oxidase subunit GlcE -
  B5M06_RS05210 (B5M06_05210) - 1102630..1103982 (-) 1353 WP_080025174.1 ammonium transporter -
  B5M06_RS05215 (B5M06_05215) - 1104009..1104347 (-) 339 WP_054067956.1 P-II family nitrogen regulator -
  B5M06_RS05220 (B5M06_05220) comM 1104557..1106092 (+) 1536 WP_054067955.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B5M06_RS05225 (B5M06_05225) - 1106080..1106970 (-) 891 WP_054067985.1 LysR family transcriptional regulator -
  B5M06_RS05230 (B5M06_05230) - 1107067..1108254 (+) 1188 WP_054067954.1 YbfB/YjiJ family MFS transporter -
  B5M06_RS05235 (B5M06_05235) - 1108296..1108895 (+) 600 WP_054067984.1 glutathione S-transferase N-terminal domain-containing protein -
  B5M06_RS05240 (B5M06_05240) - 1109028..1109762 (-) 735 WP_054067953.1 ABC transporter ATP-binding protein -
  B5M06_RS05245 (B5M06_05245) - 1109759..1110523 (-) 765 WP_054067952.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 54674.61 Da        Isoelectric Point: 8.2000

>NTDB_id=221358 B5M06_RS05220 WP_054067955.1 1104557..1106092(+) (comM) [Comamonas kerstersii strain 8943]
MSLACVQSRALMGLQAPQVTVEVHLANGLPALNLVGLADLEVREARERVRCAIANSGLEYPGNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDARKLQGWEFAGELSLSGELRPVRGALATALAMGTQEPPLRFVLPTESAREAAWATQIEVYGA
QHLLDVVQQLLPDSARDAPPSTGWQRMQPQAAQHVPDMLDMADVKGQLQARRALEIAAAGAHGLLLVGPPGSGKSMLAQR
FAGLLPPMTSTEALESAAIASLGGRFAPERWGQRPTGSPHHTASAVALVGGGSPPKPGEISYAHHGVLFLDEFPEFSRSA
LEALREPLETGRITIARAAHSTTFPARFQLIAAMNPCPCGFWGSTQRSCRCTPEQVARYQAKLSGPLLDRIDLHVEVPAL
PAQELLAQTAGEPSAAIRARVLQARERALQRQQCPNQMLQGEALDQHVQLDAAATELLRKAADKLGWSARATHRALRVAR
TIADLAGSERIASAHVAEAMQYRRALLRQTG

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=221358 B5M06_RS05220 WP_054067955.1 1104557..1106092(+) (comM) [Comamonas kerstersii strain 8943]
ATGTCTCTGGCGTGTGTACAAAGCCGCGCCTTGATGGGTCTGCAGGCCCCGCAGGTCACTGTGGAAGTGCATCTGGCCAA
TGGATTGCCAGCCCTCAACCTGGTCGGCCTGGCCGACCTGGAAGTGCGCGAAGCCCGAGAGCGCGTGCGCTGTGCGATTG
CCAACAGCGGCCTGGAATACCCCGGCAACAAGCGCATCACGGTGAACCTGGCCCCCGCCGACCTACCCAAGGATTCCGGC
CGCTTTGACCTGCCGATTGCGCTGGGCATCCTTGCCGCCAGCGGCCAGATTGATGCACGCAAGCTCCAGGGCTGGGAATT
TGCCGGAGAGCTGTCGCTGTCCGGCGAGCTGCGCCCGGTGCGCGGCGCGCTGGCTACGGCACTGGCCATGGGCACGCAGG
AACCACCGCTGCGCTTTGTGCTGCCCACGGAGAGTGCGCGCGAAGCCGCCTGGGCCACGCAGATCGAGGTCTATGGTGCA
CAGCATTTGCTCGATGTGGTGCAGCAATTGCTGCCAGACAGCGCAAGGGACGCACCACCGTCCACCGGCTGGCAACGTAT
GCAGCCGCAGGCTGCCCAGCATGTGCCGGACATGCTGGACATGGCCGATGTCAAAGGCCAGCTGCAGGCCCGACGCGCGC
TGGAAATTGCCGCCGCTGGCGCGCACGGCCTGCTGCTGGTGGGCCCGCCTGGCAGTGGCAAATCCATGCTGGCGCAGCGC
TTTGCCGGACTGCTGCCGCCCATGACGTCTACCGAAGCACTGGAGAGCGCAGCCATTGCCAGTCTGGGCGGACGCTTTGC
CCCTGAGCGCTGGGGCCAGCGCCCCACGGGCAGCCCGCACCATACGGCCAGTGCCGTGGCACTGGTCGGGGGTGGCTCAC
CGCCCAAGCCTGGCGAGATTTCCTATGCCCACCACGGCGTGCTGTTTCTGGATGAGTTTCCCGAGTTCAGCCGCAGCGCA
CTCGAAGCCCTGCGCGAGCCGCTGGAGACCGGGCGCATCACCATTGCCCGTGCGGCCCACAGCACCACCTTCCCCGCCCG
CTTTCAATTGATTGCGGCCATGAACCCCTGCCCCTGTGGCTTCTGGGGCAGCACGCAGCGCAGCTGCCGCTGCACGCCCG
AGCAGGTGGCACGTTATCAAGCCAAGCTCAGCGGCCCATTGCTCGACCGCATTGATCTGCATGTGGAAGTGCCTGCCCTG
CCTGCACAGGAGCTGCTGGCCCAGACTGCGGGTGAACCCAGCGCTGCCATCCGCGCCCGGGTGCTGCAGGCGCGTGAGCG
TGCGCTGCAGCGCCAGCAATGCCCCAACCAGATGCTGCAGGGCGAAGCGCTGGATCAGCATGTGCAGCTCGATGCCGCCG
CCACCGAGCTGCTGCGCAAGGCGGCGGACAAACTGGGGTGGAGTGCCCGCGCCACCCACCGCGCGCTGCGTGTGGCGCGC
ACGATTGCGGATCTGGCAGGCAGTGAACGCATTGCCAGCGCCCATGTGGCCGAAGCCATGCAGTACCGCCGGGCACTGCT
GCGTCAGACGGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(411-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.485

98.826

0.509
  comM Haemophilus influenzae Rd KW20

50.984

99.413

0.507
  comM Glaesserella parasuis strain SC1401

50.296

99.217

0.499
  comM Legionella pneumophila strain ERS1305867

48.155

100

0.485
  comM Legionella pneumophila str. Paris

48.155

100

0.485
  comM Vibrio campbellii strain DS40M4

48.911

98.826

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.379

99.217

0.44

Multiple sequence alignment