Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Vc3S01_RS17300 Genome accession   NZ_CP020076
Coordinates   3594183..3595706 (-) Length   507 a.a.
NCBI ID   WP_045421082.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20130629003S01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3589183..3600706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS17275 (Vc3S01_3186) - 3589495..3590481 (+) 987 WP_086371232.1 serine/threonine protein kinase -
  Vc3S01_RS17280 (Vc3S01_3187) - 3590516..3591118 (+) 603 WP_005429765.1 thiol:disulfide interchange protein DsbA/DsbL -
  Vc3S01_RS17285 (Vc3S01_3189) - 3591188..3592066 (-) 879 WP_005429796.1 acyltransferase -
  Vc3S01_RS17290 (Vc3S01_3190) - 3592236..3593192 (+) 957 WP_045421080.1 DUF2860 domain-containing protein -
  Vc3S01_RS17295 (Vc3S01_3191) - 3593337..3594170 (+) 834 WP_086371204.1 sensor domain-containing diguanylate cyclase -
  Vc3S01_RS17300 (Vc3S01_3192) comM 3594183..3595706 (-) 1524 WP_045421082.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Vc3S01_RS17305 (Vc3S01_3193) ilvG 3596169..3597815 (+) 1647 WP_010444702.1 acetolactate synthase 2 catalytic subunit -
  Vc3S01_RS17310 (Vc3S01_3194) ilvM 3597827..3598111 (+) 285 WP_005429819.1 acetolactate synthase 2 small subunit -
  Vc3S01_RS17315 (Vc3S01_3195) ilvE 3598124..3599062 (+) 939 WP_086371205.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54971.07 Da        Isoelectric Point: 9.0787

>NTDB_id=220876 Vc3S01_RS17300 WP_045421082.1 3594183..3595706(-) (comM) [Vibrio campbellii strain 20130629003S01]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRTVKGVLPAALAANKKQRRLVVPHTNGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKELKAHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQIVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAIVKERVNQARDCMLARSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=220876 Vc3S01_RS17300 WP_045421082.1 3594183..3595706(-) (comM) [Vibrio campbellii strain 20130629003S01]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCATCGGTAAGCGTGGAAGTCCACATCAGTAA
TGGGATGCCGGGCTTTACCTTGGTGGGGTTACCTGAGACCACAGTAAAAGAATCCAAAGATCGCGTACGAAGTGCGATCG
TCAATTCTAACTTTCAGTTTCCTGCAAAACGAATCACGGTCAATTTGGCACCTGCGGATTTGCCCAAAGAAGGCGGGCGC
TTCGATCTGCCGATTGCATTGGGAATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
CGGTGAATTAGCCCTTTCTGGTGGATTGAGAACAGTAAAAGGCGTATTGCCCGCTGCATTGGCTGCGAACAAAAAACAGC
GCCGTTTAGTGGTGCCTCATACTAATGGCGATCAGGCGGCACTTGTCGGCAAGGAGCAGCACAAATCTGCCCAATCACTA
TTGGAAGTTTGTGCAGAGCTTTGTGGTCAACACCAATTGAATTTGTACCAAACGCCCAAGAAGAAAGAGCTCAAAGCACA
CGGTCGTGACTTGCAGGATATCATTGGTCAGCAGCAGGGAAAGCGCGCTTTAGAAATTGCGGCAGCTGGCAATCACAACC
TGCTTTTCCTTGGCCCTCCAGGCACTGGCAAAACCATGTTGGCCTCTCGATTATGCGATTTGTTACCTGAGATGAGTGAT
GAAGAGGCGATGGAAACGGCTTCTGTGGCGTCACTGACTCAAAGTGAAATCAATGAACATAACTGGAAGACGCGGCCGTT
TCGTGCCCCGCATCATTCCAGCTCAATGGCGGCTTTAGTTGGTGGTGGATCTGTGCCGAGACCGGGCGAAATATCTCTAG
CTCACAACGGGTTATTATTTTTGGACGAGATGCCGGAGTTTGATCGTAAGGTGCTCGACTCTTTACGTGAGCCATTGGAG
TCCGGTGAAATTATTATATCTCGGGCGCAAGGTAAGACGCGTTTTCCTGCTCGGTTCCAAATTGTAGGGGCGCTTAACCC
GAGTCCGACAGGGTATTACGAAGGAAACCAAGCCAGAACGAATCCGCAAGCCATCCTGCGTTACCTTGGCCGATTATCAG
GCCCCCTTCTTGACCGCTTTGATATGTCATTAGAAATTCCTGCGTTGCCGAAAGGAACCCTCTCTGAAGGCGGCGATAGA
GGGGAACCCACGGCTATCGTCAAAGAGCGGGTGAATCAAGCACGTGACTGTATGCTGGCTCGCAGTGGTAAGGTGAATGC
ATTATTGGGCAGTCGTGAAATTGAAGCCTTCTGCCCGCTGCAAAAAAGTGATGCGGAGTTTTTGGAAAATGCGCTGCATC
GTCTTGGATTGTCGATTCGTGCTTATCACCGCATCATTAAAGTTGCGCGTACTATTGCCGATCTGGAGGGTTCACCGCAA
ATTGAGCGAACGCACCTAGCAGAAGCTTTGGGCTATCGAGCAATGGATAGGTTACTTAAACAGTTAACCGCACAAGCCGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

99.606

100

0.996
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

63.922

100

0.643
  comM Legionella pneumophila str. Paris

49.799

98.225

0.489
  comM Legionella pneumophila strain ERS1305867

49.799

98.225

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment