Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OTEC02_RS17675 Genome accession   NZ_CP020015
Coordinates   3724187..3725674 (+) Length   495 a.a.
NCBI ID   WP_081175527.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain OTEC-02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3719187..3730674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTEC02_RS17650 (OTEC02_17650) ribD 3720102..3721187 (-) 1086 WP_081175523.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  OTEC02_RS17655 (OTEC02_17655) nrdR 3721203..3721661 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  OTEC02_RS17660 (OTEC02_17660) - 3721825..3723219 (-) 1395 WP_081175525.1 ammonium transporter -
  OTEC02_RS17665 (OTEC02_17665) glnK 3723277..3723615 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  OTEC02_RS17670 (OTEC02_17670) - 3723894..3724121 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  OTEC02_RS17675 (OTEC02_17675) comM 3724187..3725674 (+) 1488 WP_081175527.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OTEC02_RS17680 (OTEC02_17680) - 3725689..3727122 (-) 1434 WP_081175529.1 PLP-dependent aminotransferase family protein -
  OTEC02_RS17685 (OTEC02_17685) - 3727234..3728010 (+) 777 WP_081175531.1 aldolase -
  OTEC02_RS17690 (OTEC02_17690) - 3728026..3728904 (+) 879 WP_081175533.1 dihydrodipicolinate synthase family protein -
  OTEC02_RS17695 (OTEC02_17695) - 3728948..3729760 (-) 813 WP_213033125.1 TorF family putative porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54459.53 Da        Isoelectric Point: 7.7217

>NTDB_id=220112 OTEC02_RS17675 WP_081175527.1 3724187..3725674(+) (comM) [Acinetobacter lactucae strain OTEC-02]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAVGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLFPLDNGQDISHLPDLECYPVNHL
KEVCEHFLGTKSLSLIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSSSVRQRVIYAYKQQMQRQSCLNQALSPKQLEQFAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SSHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=220112 OTEC02_RS17675 WP_081175527.1 3724187..3725674(+) (comM) [Acinetobacter lactucae strain OTEC-02]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAAGTTGAGGTACATGTAAGTCA
AGGCTTGCCTTCTCTTACCATTGTCGGGCTAGCAGAAGCGGCTGTAAGAGAAAGTAAAGATCGGGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACTAAACGGCTGACCATTAATCTGGCACCAGCAGATTTGCCCAAAGATGGTTCACGT
CTAGATTTACCGATTGCTGTAGGCATTTTAATTGCGTCTGGTCAGCTGCCAGAGAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCGCTCGATGGTCATGTAAGGCCAGTGTCAGGTACTTTAACTTTGGCAATGGCCTGTCAACAAGCCAAGC
ATAAAATGCTTTTTCCCCTTGATAATGGTCAAGATATTAGCCACTTACCTGACCTTGAATGTTATCCTGTGAACCACTTA
AAAGAAGTGTGTGAACATTTTCTGGGCACAAAATCGCTATCATTGATTGAACCTGCAACGACTTCAAACCAAATGCCCTA
TAAATTTGATCTGGCAGATGTGAAAGGTCAGCTGCGTCCACGTCGCGCACTAGAAATAGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGGCCACCAGGTACAGGTAAGACTTTACTCGCTTCACGCCTTCCTTCAATTTTGCCGCCGCTTTCTAAT
CAGGAAACGCTTGAAGTCGCGAGTATTTATTCCATTTCAAATACACCGCATACGTTTGGCCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCGATTGCACTGGTTGGGGGCGGTTCGCATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GCGTTTTGTTTTTAGATGAGCTCCCTGAGTTTGACAGAAAAGTGCTAGAAGTCTTACGCCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGGGCAGCTCGGCAAATTACTTATCCTGCGAACTTCCAACTGATTGCAGCAATGAACCCCTGCCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGCTCACCAGAAAGTATTAAGCGCTATCAAAATCGCATATCTGGAC
CACTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTACAAGATCCAACCCCTGCCGAA
GACTCCAGCAGTGTTCGACAACGTGTGATTTATGCTTATAAACAACAAATGCAAAGACAAAGTTGTTTAAATCAAGCACT
TTCACCAAAACAACTAGAACAATTTGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAGCAACGCTTAA
ATCTATCGGCTCGTGCTTATCATCGCGTTTTACGCGTTGCTCGTACCATTGCTGATTTAGCTCAAAGTGAAATGATTCAA
AGTTCGCACCTTACAGAAGCACTCTCCTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.202

100

0.503
  comM Glaesserella parasuis strain SC1401

49.299

100

0.497
  comM Haemophilus influenzae Rd KW20

48.697

100

0.491
  comM Legionella pneumophila str. Paris

48.594

100

0.489
  comM Legionella pneumophila strain ERS1305867

48.594

100

0.489
  comM Vibrio campbellii strain DS40M4

48.081

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.467

Multiple sequence alignment