Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CPS_RS04130 Genome accession   NC_003910
Coordinates   935811..936512 (+) Length   233 a.a.
NCBI ID   WP_011041773.1    Uniprot ID   Q487T6
Organism   Colwellia psychrerythraea 34H     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 930811..941512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPS_RS04115 (CPS_0926) pssA 931386..932714 (+) 1329 WP_011041769.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  CPS_RS04120 (CPS_0927) - 932787..934613 (-) 1827 WP_011041770.1 hypothetical protein -
  CPS_RS04125 (CPS_0929) - 935056..935451 (+) 396 WP_011041772.1 acyl-CoA thioesterase -
  CPS_RS04130 (CPS_0930) ssb 935811..936512 (+) 702 WP_011041773.1 single-stranded DNA-binding protein Machinery gene
  CPS_RS04135 (CPS_0931) - 936638..937681 (-) 1044 WP_011041774.1 NADP-dependent oxidoreductase -
  CPS_RS04140 (CPS_0933) - 937900..938589 (-) 690 WP_011041776.1 type 1 glutamine amidotransferase domain-containing protein -
  CPS_RS04145 (CPS_0934) - 938739..939635 (+) 897 WP_011041777.1 LysR family transcriptional regulator -
  CPS_RS04150 (CPS_0935) - 939802..940752 (+) 951 WP_138140233.1 alpha/beta hydrolase family esterase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 24899.35 Da        Isoelectric Point: 5.9033

>NTDB_id=22009 CPS_RS04130 WP_011041773.1 935811..936512(+) (ssb) [Colwellia psychrerythraea 34H]
MAGVNKVIIVGNLGKDPEVRFMPNGGAVANITVATSDSWKDKQTGEQKDKTEWHRVVMFGKLAEIAGEYLKKGSKVYLEG
SLQTRKWTNQQGQDQYTTEIVLQGFNGVMQMLDGKSSQGQGGGFANQGQQQSGGFQQQAPQQSGGFSNQPAQQGGFSNQG
QQAKAPAQQGGFAPQQQAPAQQGGFAPQQQAPAQQGGFAPQQAPAQQGGYQQQQAPKVNPQEPSIDFDDDIPF

Nucleotide


Download         Length: 702 bp        

>NTDB_id=22009 CPS_RS04130 WP_011041773.1 935811..936512(+) (ssb) [Colwellia psychrerythraea 34H]
ATGGCGGGTGTAAATAAAGTAATCATAGTAGGTAACTTAGGTAAAGATCCTGAGGTACGTTTTATGCCAAATGGTGGTGC
AGTAGCAAATATTACTGTTGCAACGTCAGACTCATGGAAAGACAAACAAACTGGTGAGCAGAAAGACAAAACAGAATGGC
ATCGTGTTGTTATGTTTGGAAAACTTGCTGAAATTGCTGGTGAATACTTGAAAAAAGGTTCAAAAGTATATCTTGAAGGA
TCTTTGCAAACGCGTAAGTGGACCAACCAACAAGGTCAAGATCAATATACGACTGAAATCGTATTACAGGGCTTTAATGG
CGTAATGCAAATGTTAGATGGAAAGTCGTCTCAAGGTCAGGGCGGTGGTTTTGCTAATCAAGGACAACAGCAAAGTGGTG
GCTTCCAGCAACAAGCTCCACAGCAATCGGGTGGATTTTCTAACCAGCCAGCTCAACAAGGTGGATTTTCTAACCAAGGA
CAGCAAGCAAAAGCACCAGCACAACAAGGTGGCTTTGCTCCGCAACAACAAGCACCAGCACAACAAGGTGGCTTTGCTCC
GCAACAGCAAGCACCAGCACAACAAGGTGGTTTTGCTCCTCAACAAGCACCAGCACAACAAGGTGGTTATCAGCAACAGC
AAGCACCTAAAGTGAACCCACAAGAACCATCAATTGATTTCGATGATGATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q487T6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.515

99.142

0.511
  ssb Glaesserella parasuis strain SC1401

48.739

100

0.498
  ssb Neisseria gonorrhoeae MS11

39.565

98.712

0.391
  ssb Neisseria meningitidis MC58

39.13

98.712

0.386

Multiple sequence alignment