Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BVZ63_RS01475 | Genome accession | NZ_CP020014 |
| Coordinates | 323268..323774 (+) | Length | 168 a.a. |
| NCBI ID | WP_042611853.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain 11P6H | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 318268..328774
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BVZ63_RS01470 (BVZ63_307) | uvrA | 320284..323115 (-) | 2832 | WP_105197588.1 | excinuclease ABC subunit UvrA | - |
| BVZ63_RS01475 (BVZ63_309) | ssb | 323268..323774 (+) | 507 | WP_042611853.1 | single-stranded DNA-binding protein | Machinery gene |
| BVZ63_RS01480 (BVZ63_310) | - | 323952..324746 (-) | 795 | WP_042611854.1 | energy transducer TonB | - |
| BVZ63_RS01485 (BVZ63_311) | exbD | 324756..325199 (-) | 444 | WP_005648853.1 | TonB system transport protein ExbD | - |
| BVZ63_RS01490 (BVZ63_312) | exbB | 325203..325655 (-) | 453 | WP_005648856.1 | TonB-system energizer ExbB | - |
| BVZ63_RS01495 (BVZ63_313) | bcp | 325824..326300 (-) | 477 | WP_105197590.1 | thioredoxin-dependent thiol peroxidase | - |
| BVZ63_RS01500 (BVZ63_314) | dapA | 326401..327297 (+) | 897 | WP_042594198.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| BVZ63_RS01505 (BVZ63_315) | bamC | 327409..328056 (+) | 648 | WP_042599575.1 | outer membrane protein assembly factor BamC | - |
| BVZ63_RS01510 (BVZ63_316) | hpf | 328229..328552 (+) | 324 | WP_005648863.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18786.57 Da Isoelectric Point: 5.2649
>NTDB_id=220036 BVZ63_RS01475 WP_042611853.1 323268..323774(+) (ssb) [Haemophilus influenzae strain 11P6H]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYSNDMGSTPQSSYQARQTNNGGSYQSSRPAPQQAAPQAEPPMD
GFDDDIPF
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYSNDMGSTPQSSYQARQTNNGGSYQSSRPAPQQAAPQAEPPMD
GFDDDIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=220036 BVZ63_RS01475 WP_042611853.1 323268..323774(+) (ssb) [Haemophilus influenzae strain 11P6H]
ATGGCTGGAATTAATAAAGTCATTATTGTTGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATTAGCGTAGCAACCAGTGAAAGCTGGAACGACCGCAATACGGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTTTATCGTCGTCAAGCGGAGATTTGCGGCGAATACTTGCGCAAAGGTTCTCAAGTATATGTGGAAGGT
CGTTTAAAAACACGTAAATGGCAAGATCAAAATGGTCAAGATCGCTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTATAGCAATGATATGGGCAGTACACCACAATCCTCTTACCAAGCTCGTC
AAACTAACAATGGTGGTAGTTATCAATCATCTCGTCCAGCTCCACAACAAGCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA
ATGGCTGGAATTAATAAAGTCATTATTGTTGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATTAGCGTAGCAACCAGTGAAAGCTGGAACGACCGCAATACGGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTTTATCGTCGTCAAGCGGAGATTTGCGGCGAATACTTGCGCAAAGGTTCTCAAGTATATGTGGAAGGT
CGTTTAAAAACACGTAAATGGCAAGATCAAAATGGTCAAGATCGCTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTATAGCAATGATATGGGCAGTACACCACAATCCTCTTACCAAGCTCGTC
AAACTAACAATGGTGGTAGTTATCAATCATCTCGTCCAGCTCCACAACAAGCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
66.851 |
100 |
0.72 |
| ssb | Vibrio cholerae strain A1552 |
56.897 |
100 |
0.589 |
| ssb | Neisseria meningitidis MC58 |
51.149 |
100 |
0.53 |
| ssb | Neisseria gonorrhoeae MS11 |
50.867 |
100 |
0.524 |