Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BV139_RS01725 | Genome accession | NZ_CP020012 |
| Coordinates | 367680..368186 (+) | Length | 168 a.a. |
| NCBI ID | WP_005686675.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain 6P24H2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 362680..373186
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV139_RS01720 (BV139_353) | uvrA | 364696..367527 (-) | 2832 | WP_005686674.1 | excinuclease ABC subunit UvrA | - |
| BV139_RS01725 (BV139_354) | ssb | 367680..368186 (+) | 507 | WP_005686675.1 | single-stranded DNA-binding protein | Machinery gene |
| BV139_RS01730 (BV139_355) | - | 368364..369158 (-) | 795 | WP_005686676.1 | energy transducer TonB | - |
| BV139_RS01735 (BV139_356) | exbD | 369168..369611 (-) | 444 | WP_005648853.1 | TonB system transport protein ExbD | - |
| BV139_RS01740 (BV139_357) | exbB | 369615..370067 (-) | 453 | WP_005648856.1 | TonB-system energizer ExbB | - |
| BV139_RS01745 (BV139_358) | bcp | 370236..370703 (-) | 468 | WP_005686677.1 | thioredoxin-dependent thiol peroxidase | - |
| BV139_RS01750 (BV139_359) | dapA | 370804..371700 (+) | 897 | WP_005686678.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| BV139_RS01755 (BV139_360) | bamC | 371812..372459 (+) | 648 | WP_005686679.1 | outer membrane protein assembly factor BamC | - |
| BV139_RS01760 (BV139_361) | hpf | 372632..372955 (+) | 324 | WP_005648863.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18739.47 Da Isoelectric Point: 5.2649
>NTDB_id=219963 BV139_RS01725 WP_005686675.1 367680..368186(+) (ssb) [Haemophilus influenzae strain 6P24H2]
MAGVNKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNASGSGNDMGGTPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF
MAGVNKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNASGSGNDMGGTPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=219963 BV139_RS01725 WP_005686675.1 367680..368186(+) (ssb) [Haemophilus influenzae strain 6P24H2]
ATGGCTGGAGTTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACGGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTTTATCGTCGTCAAGCGGAGATTTGCGGCGAATATTTACGTAAAGGTTCTCAAGTATATGTGGAGGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAAGTGGTTCTGGTAATGATATGGGCGGTACGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA
ATGGCTGGAGTTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACGGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTTTATCGTCGTCAAGCGGAGATTTGCGGCGAATATTTACGTAAAGGTTCTCAAGTATATGTGGAGGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAAGTGGTTCTGGTAATGATATGGGCGGTACGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
68.333 |
100 |
0.732 |
| ssb | Vibrio cholerae strain A1552 |
56.044 |
100 |
0.607 |
| ssb | Neisseria meningitidis MC58 |
50.289 |
100 |
0.518 |
| ssb | Neisseria gonorrhoeae MS11 |
50.289 |
100 |
0.518 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.057 |
100 |
0.363 |