Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BV134_RS03170 | Genome accession | NZ_CP020011 |
| Coordinates | 630166..630672 (-) | Length | 168 a.a. |
| NCBI ID | WP_013525504.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain 67P56H1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 625166..635672
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV134_RS03135 (BV134_640) | hpf | 625399..625722 (-) | 324 | WP_005648863.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| BV134_RS03140 (BV134_641) | bamC | 625912..626541 (-) | 630 | WP_011271947.1 | outer membrane protein assembly factor BamC | - |
| BV134_RS03145 (BV134_642) | dapA | 626652..627548 (-) | 897 | WP_005692198.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| BV134_RS03150 (BV134_643) | bcp | 627649..628116 (+) | 468 | WP_005653400.1 | thioredoxin-dependent thiol peroxidase | - |
| BV134_RS03155 (BV134_644) | exbB | 628285..628737 (+) | 453 | WP_005648856.1 | TonB-system energizer ExbB | - |
| BV134_RS03160 (BV134_645) | exbD | 628741..629184 (+) | 444 | WP_005648853.1 | TonB system transport protein ExbD | - |
| BV134_RS03165 (BV134_646) | - | 629194..629988 (+) | 795 | WP_042611854.1 | energy transducer TonB | - |
| BV134_RS03170 (BV134_647) | ssb | 630166..630672 (-) | 507 | WP_013525504.1 | single-stranded DNA-binding protein | Machinery gene |
| BV134_RS03175 (BV134_648) | uvrA | 630826..633657 (+) | 2832 | WP_042601434.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18693.45 Da Isoelectric Point: 5.2649
>NTDB_id=219945 BV134_RS03170 WP_013525504.1 630166..630672(-) (ssb) [Haemophilus influenzae strain 67P56H1]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGSGNDMGGAPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGSGNDMGGAPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=219945 BV134_RS03170 WP_013525504.1 630166..630672(-) (ssb) [Haemophilus influenzae strain 67P56H1]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTATATGTGGAAGGG
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTCTGGTAATGATATGGGCGGTGCGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTATATGTGGAAGGG
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTCTGGTAATGATATGGGCGGTGCGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
67.778 |
100 |
0.726 |
| ssb | Vibrio cholerae strain A1552 |
55.495 |
100 |
0.601 |
| ssb | Neisseria meningitidis MC58 |
50.867 |
100 |
0.524 |
| ssb | Neisseria gonorrhoeae MS11 |
50.867 |
100 |
0.524 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
34.831 |
100 |
0.369 |