Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   BUM88_RS17955 Genome accession   NZ_CP020000
Coordinates   3723502..3724029 (-) Length   175 a.a.
NCBI ID   WP_003653811.1    Uniprot ID   A0AAW8QTI7
Organism   Acinetobacter calcoaceticus strain CA16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3718502..3729029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM88_RS17935 (BUM88_17935) - 3718696..3719577 (-) 882 WP_080027889.1 hypothetical protein -
  BUM88_RS17940 (BUM88_17940) aroB 3719594..3720676 (-) 1083 WP_080027890.1 3-dehydroquinate synthase -
  BUM88_RS17945 (BUM88_17945) aroK 3720705..3721274 (-) 570 WP_003653807.1 shikimate kinase AroK -
  BUM88_RS17950 (BUM88_17950) pilQ 3721286..3723439 (-) 2154 WP_080027891.1 type IV pilus secretin PilQ family protein Machinery gene
  BUM88_RS17955 (BUM88_17955) pilP 3723502..3724029 (-) 528 WP_003653811.1 pilus assembly protein PilP Machinery gene
  BUM88_RS17960 (BUM88_17960) pilO 3724040..3724789 (-) 750 WP_005038271.1 type 4a pilus biogenesis protein PilO Machinery gene
  BUM88_RS17965 (BUM88_17965) pilN 3724786..3725427 (-) 642 WP_080027892.1 PilN domain-containing protein Machinery gene
  BUM88_RS17970 (BUM88_17970) pilM 3725427..3726485 (-) 1059 WP_213033728.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19310.37 Da        Isoelectric Point: 9.0270

>NTDB_id=219741 BUM88_RS17955 WP_003653811.1 3723502..3724029(-) (pilP) [Acinetobacter calcoaceticus strain CA16]
MKLKQISFSILACLVLVGCDSRIDAVNQQMADIRNQPPQPIDPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSIRNNRGQVLALIQSPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=219741 BUM88_RS17955 WP_003653811.1 3723502..3724029(-) (pilP) [Acinetobacter calcoaceticus strain CA16]
ATGAAACTTAAGCAAATTTCTTTTTCTATTTTGGCATGTTTAGTTTTAGTCGGATGTGACTCGAGAATCGATGCTGTAAA
TCAGCAAATGGCAGATATACGTAACCAGCCACCACAGCCGATAGATCCAGCACCTGTTTTCACACCTGTACCACAATTTA
ATTATGCGGCTCATCAGCTAAAGAGTCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCAGGAAAACGG
GTATATCCGAATTTCTCACGTGCACCTCAGCCTCTAGAAAGTTATGCATTAGAATCCTTAAACATGAAAGGAAGCATACG
TAATAACCGTGGGCAAGTACTGGCTCTTATCCAATCACCTGATCAGCAAATTGAGCGAGTGCAGGTGGGGAACTATATCG
GGATGAATCAAGGGCGTATTACCCATATTGGTCCAACTCAGATTGATCTGGTAGAAATTGTCCCCGATGGGCGTGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

89.714

100

0.897
  comL Acinetobacter baylyi ADP1

71.345

97.714

0.697

Multiple sequence alignment