Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   BUM88_RS17965 Genome accession   NZ_CP020000
Coordinates   3724786..3725427 (-) Length   213 a.a.
NCBI ID   WP_080027892.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain CA16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3719786..3730427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM88_RS17945 (BUM88_17945) aroK 3720705..3721274 (-) 570 WP_003653807.1 shikimate kinase AroK -
  BUM88_RS17950 (BUM88_17950) pilQ 3721286..3723439 (-) 2154 WP_080027891.1 type IV pilus secretin PilQ family protein Machinery gene
  BUM88_RS17955 (BUM88_17955) pilP 3723502..3724029 (-) 528 WP_003653811.1 pilus assembly protein PilP Machinery gene
  BUM88_RS17960 (BUM88_17960) pilO 3724040..3724789 (-) 750 WP_005038271.1 type 4a pilus biogenesis protein PilO Machinery gene
  BUM88_RS17965 (BUM88_17965) pilN 3724786..3725427 (-) 642 WP_080027892.1 PilN domain-containing protein Machinery gene
  BUM88_RS17970 (BUM88_17970) pilM 3725427..3726485 (-) 1059 WP_213033728.1 pilus assembly protein PilM Machinery gene
  BUM88_RS17975 (BUM88_17975) ponA 3726647..3729208 (+) 2562 WP_155120919.1 penicillin-binding protein PBP1a -
  BUM88_RS17980 (BUM88_17980) - 3729262..3730086 (-) 825 WP_080027894.1 putative RNA methyltransferase -
  BUM88_RS17985 (BUM88_17985) - 3730089..3730421 (-) 333 WP_003653820.1 DUF7709 family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23975.32 Da        Isoelectric Point: 6.4520

>NTDB_id=219743 BUM88_RS17965 WP_080027892.1 3724786..3725427(-) (pilN) [Acinetobacter calcoaceticus strain CA16]
MATINLLPWRDGLREQRKRQFIIFCFGVVVLGITTVFSGWFYLNQKLNDQEQANQLITSTNQSLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKTASSLLPRVEDSYGSFVVTVDLGEMGVTTTDDTANTSVSTDKGAVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=219743 BUM88_RS17965 WP_080027892.1 3724786..3725427(-) (pilN) [Acinetobacter calcoaceticus strain CA16]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGCAAAAGACAATTTATTATTTTCTGTTTTGG
GGTCGTTGTTTTGGGGATTACCACTGTATTTTCTGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCTA
ATCAACTCATTACCAGTACAAACCAGAGTCTAGATCAACAACTTAAAACCTTAAATGGTCTGCAAGAACAACGTGACGCT
ATTATCGAGCGTATGAAACTTATTCAGGGATTGCAAAGTCAGCGCCCTGTTGTCGTGCGTTTGGTAGATGAATTGGTACG
TGTTACTCCTGCTGCGATGTATTTGACTAAATTTAGTCGAACTGGAGATAAATTTACCATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCGGAGTTATTACGTAACCTCGAAGCATCACCATGGTATCGCAACGCTTTTATGAACTCTTTCTTGGCG
ACTGAAGAGAAAAAAGATAAGACTGCGAGTTCGCTGCTTCCTCGAGTGGAAGATAGCTATGGCAGTTTTGTTGTGACTGT
TGATTTGGGCGAAATGGGGGTGACTACAACAGATGATACCGCCAATACGTCTGTAAGCACGGATAAGGGGGCGGTTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.263

100

0.883
  comN Acinetobacter baylyi ADP1

73.039

95.775

0.7

Multiple sequence alignment