Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BH100N_RS14715 Genome accession   NZ_CP025703
Coordinates   2884227..2884964 (+) Length   245 a.a.
NCBI ID   WP_000197692.1    Uniprot ID   -
Organism   Escherichia coli strain BH100N substr. MG2017     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2879227..2889964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BH100N_RS14700 (BH100N_02832) clpC 2879681..2882254 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  BH100N_RS14705 (BH100N_02833) yfiH 2882384..2883115 (-) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  BH100N_RS14710 (BH100N_02834) rluD 2883112..2884092 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BH100N_RS14715 (BH100N_02835) comL 2884227..2884964 (+) 738 WP_000197692.1 outer membrane protein assembly factor BamD Machinery gene
  BH100N_RS14725 (BH100N_02837) raiA 2885234..2885575 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  BH100N_RS14730 pheL 2885679..2885726 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  BH100N_RS14735 (BH100N_02838) pheA 2885825..2886985 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  BH100N_RS14740 (BH100N_02839) tyrA 2887028..2888149 (-) 1122 WP_000225234.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  BH100N_RS14745 (BH100N_02840) aroF 2888160..2889230 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  BH100N_RS14750 (BH100N_02841) yfiL 2889440..2889805 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27928.53 Da        Isoelectric Point: 7.1589

>NTDB_id=219614 BH100N_RS14715 WP_000197692.1 2884227..2884964(+) (comL) [Escherichia coli strain BH100N substr. MG2017]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQRFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=219614 BH100N_RS14715 WP_000197692.1 2884227..2884964(+) (comL) [Escherichia coli strain BH100N substr. MG2017]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAAGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment