Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B2G73_RS18150 Genome accession   NZ_CP019986
Coordinates   3693006..3694526 (+) Length   506 a.a.
NCBI ID   WP_079225760.1    Uniprot ID   -
Organism   Citrobacter werkmanii strain BF-6     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3688006..3699526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2G73_RS18130 - 3689561..3690490 (-) 930 WP_003829030.1 branched-chain amino acid transaminase -
  B2G73_RS18135 ilvM 3690508..3690771 (-) 264 WP_006686038.1 acetolactate synthase 2 small subunit -
  B2G73_RS18140 ilvG 3690768..3692414 (-) 1647 WP_042314090.1 acetolactate synthase 2 catalytic subunit -
  B2G73_RS18145 ilvL 3692554..3692652 (-) 99 WP_001311244.1 ilv operon leader peptide -
  B2G73_RS18150 comM 3693006..3694526 (+) 1521 WP_079225760.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B2G73_RS18155 maoP 3694551..3694889 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  B2G73_RS18160 hdfR 3694996..3695841 (+) 846 WP_137365762.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55125.07 Da        Isoelectric Point: 6.9161

>NTDB_id=219603 B2G73_RS18150 WP_079225760.1 3693006..3694526(+) (comM) [Citrobacter werkmanii strain BF-6]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTAHNLDTYELVGELALTGTLRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QSVCAFLEGKHDLDRPLSADFTPEPLADDLSDIIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSATIQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCPPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSAVKG
EDSATVKQRVIAAQERQYRRQNKLNAHLGSQDIHEYCQLRSDDAQWLEEALEHLGLSIRAWLRLIKVARTIADLEQCDHI
TRQHLQEAIGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=219603 B2G73_RS18150 WP_079225760.1 3693006..3694526(+) (comM) [Citrobacter werkmanii strain BF-6]
ATGTCACTATCGATTGTTCACACCCGCGCTGCGCTTGGCGTGAATGCGCCAGCCATTACCATTGAGGTACATATCAGCAA
TGGTCTGCCTGGTTTAACCATGGTGGGATTGCCAGAAACTACGGTGAAAGAGGCCCGCGATCGGGTTCGTAGTGCGATTA
TTAATAGTGGTTATGAATTCCCGGCCAAGAAGATAACCATTAACCTCGCTCCTGCCGATCTTCCCAAAGAAGGAGGACGA
TATGATTTACCTATCGCAGTGGCGCTTCTGGCCGCTTCTGAGCAGCTTACAGCCCATAATCTCGATACCTACGAGCTGGT
AGGTGAATTAGCGCTTACAGGCACGCTACGCGGCGTTCCAGGAGCGATTTCAAGCGCAACCGAAGCAATACGTGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCCGCTGAAGTCGGACTAATACATGGTGAAGGGTGTCTGATTGCCGATCACCTA
CAGTCCGTATGCGCATTTCTCGAAGGGAAGCATGATTTAGACAGACCGTTATCTGCAGACTTCACGCCAGAGCCATTAGC
TGATGATCTGAGCGATATCATCGGTCAGGAACAAGGCAAACGCGGACTGGAGCTCACTGCGGCTGGCGGTCACAACCTGC
TGCTTATCGGCCCTCCGGGGACGGGAAAGACCATGCTGGCCAGTCGCCTCAGAGGGCTGCTTCCGCCTCTTAGCAACGAT
GAGGCACTGGAAAGTGCGGCGATACTCAGCCTGGTCAATTCCGCTACGATACAAAAACAGTGGAAGCAGCGCCCTTTTCG
CTCACCGCATCACAGTGCTTCGTTAACCGCTATGGTAGGCGGTGGGTCTATTCCTGCGCCGGGAGAGATCTCTCTGGCGC
ATAACGGCATACTATTTCTGGACGAATTACCTGAGTTTGAGCGGCGCACGTTGGATGCCCTGCGTGAACCTATCGAGTCC
GGGCAAATCCATTTATCCCGCACTCGGGCTAAAATAACCTACCCTGCGCGCTTTCAACTCATTGCTGCAATGAATCCCAG
CCCAACGGGTCATTATCAGGGGAACCATAACCGCTGCCCCCCAGAACAAACGCTGCGTTACCTCAACCGATTATCAGGAC
CGTTTCTTGACCGTTTCGATCTCTCCCTCGAAATCCCTTTGCCTCCGCCCGGCATACTCAGCCAGAGCGCAGTGAAAGGG
GAAGATAGCGCCACGGTGAAGCAACGCGTTATCGCCGCACAAGAGCGTCAGTATCGGCGACAAAATAAGTTAAACGCGCA
TCTGGGCAGTCAGGATATACATGAATATTGCCAACTTCGCAGTGATGATGCGCAGTGGCTTGAAGAGGCATTGGAACATC
TCGGATTATCTATCCGCGCGTGGCTGCGATTGATAAAGGTCGCCCGAACCATTGCGGATCTCGAGCAATGTGACCATATT
ACCCGTCAGCATTTGCAGGAGGCCATTGGGTATAGGGCGATCGACAGGTTACTCATTCATTTGCAGAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.121

100

0.587
  comM Glaesserella parasuis strain SC1401

58.153

100

0.585
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579
  comM Legionella pneumophila str. Paris

47.082

98.221

0.462
  comM Legionella pneumophila strain ERS1305867

47.082

98.221

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.651

99.605

0.435

Multiple sequence alignment