Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   PI20285_RS09810 Genome accession   NZ_CP019981
Coordinates   1980114..1981376 (+) Length   420 a.a.
NCBI ID   WP_057773339.1    Uniprot ID   -
Organism   Pediococcus inopinatus strain DSM 20285     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1975114..1986376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PI20285_RS09795 (PI20285_09765) - 1976729..1978051 (+) 1323 WP_057773345.1 hypothetical protein -
  PI20285_RS09800 (PI20285_09770) - 1978066..1979148 (+) 1083 WP_057773343.1 two-component system regulatory protein YycI -
  PI20285_RS09805 (PI20285_09775) - 1979200..1980003 (+) 804 WP_057773341.1 MBL fold metallo-hydrolase -
  PI20285_RS09810 (PI20285_09780) htrA 1980114..1981376 (+) 1263 WP_057773339.1 trypsin-like peptidase domain-containing protein Regulator
  PI20285_RS09815 (PI20285_09785) rlmH 1982048..1982527 (+) 480 WP_057773337.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  PI20285_RS09820 (PI20285_09790) msrA 1982568..1983407 (-) 840 WP_057773335.1 peptide-methionine (S)-S-oxide reductase MsrA -
  PI20285_RS09825 (PI20285_09795) - 1983581..1983925 (+) 345 WP_057773333.1 hypothetical protein -
  PI20285_RS09830 (PI20285_09800) - 1984065..1986041 (-) 1977 WP_057773331.1 CDP-glycerol glycerophosphotransferase family protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 43329.81 Da        Isoelectric Point: 10.0905

>NTDB_id=219547 PI20285_RS09810 WP_057773339.1 1980114..1981376(+) (htrA) [Pediococcus inopinatus strain DSM 20285]
MFKNKNLWTVIITALVAGLIGGGIAFGAANYMSNRQAESETAVPSGSNSTGSTKTSNVKVNVSSQSEKAYSSIKNAVVTV
INLKKESSTSSNSLYGSIFGDSSSSSNSSSSDSSKLETYAEGSGVIYKKSGNAAYVVTNNHVISGSNAVEIIMSNGKKLS
AKVVGKDTVTDLAVLKINSSSVSTVASFGDSNSIKVGETALAIGSPLGSDYATSLTQGIVSAKKRTVATMNEAGQETGEA
TVIQTDAAINSGNSGGPLINLAGQVIGINSMKLSSSSSSGTSVEGMGFAIPSNEVVTIINQLISKGKIVRPAIGASLLDL
TDITASQQKSVLKLSSKVNEGAVIYKTYAGSPARNAGLKKYDVITKLDGTKITSVATLRDKLYKLKVGDSVKITWYRGNT
QKTGTIKLTETTSELSSEAK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=219547 PI20285_RS09810 WP_057773339.1 1980114..1981376(+) (htrA) [Pediococcus inopinatus strain DSM 20285]
ATGTTTAAAAATAAAAATTTATGGACAGTTATCATTACAGCATTAGTTGCTGGTTTAATTGGTGGAGGAATTGCATTTGG
GGCGGCTAATTACATGAGTAATCGGCAGGCCGAATCGGAAACGGCGGTTCCAAGTGGTTCCAACAGCACCGGTTCGACAA
AAACCAGTAATGTGAAGGTCAATGTTAGTAGCCAATCCGAAAAAGCTTACAGCAGCATTAAAAACGCCGTTGTGACGGTC
ATTAATTTAAAGAAGGAAAGTTCTACTTCAAGTAATAGTCTTTACGGATCTATCTTTGGAGACTCATCTTCAAGTTCTAA
TTCCAGTAGTTCAGATTCCAGCAAGTTAGAAACCTACGCTGAAGGTTCTGGTGTCATTTACAAGAAGAGTGGCAATGCGG
CCTATGTTGTAACGAATAACCATGTTATTTCAGGTTCTAACGCAGTAGAAATCATCATGAGTAATGGTAAGAAGCTATCT
GCGAAAGTGGTTGGAAAAGATACTGTAACTGATTTGGCTGTTTTGAAGATTAATTCTTCATCGGTTTCAACAGTTGCGAG
TTTCGGAGATTCAAACAGTATTAAAGTTGGTGAAACAGCCTTAGCAATTGGTTCTCCTCTAGGTTCTGATTATGCAACTT
CGTTAACGCAAGGAATTGTTTCTGCTAAGAAGCGAACAGTTGCCACAATGAATGAAGCCGGTCAAGAAACGGGCGAAGCA
ACTGTTATTCAAACGGATGCAGCCATTAACTCAGGTAATTCAGGTGGTCCGTTGATCAATTTAGCTGGTCAAGTTATCGG
AATTAATTCGATGAAACTTTCTAGCAGTAGTTCTTCTGGTACGAGCGTTGAAGGGATGGGATTTGCGATTCCTTCCAATG
AAGTTGTGACGATTATTAATCAATTAATTTCTAAAGGTAAAATTGTTAGGCCAGCGATTGGAGCATCCTTGTTGGATTTG
ACAGATATTACTGCTAGTCAGCAAAAGTCAGTTTTGAAGCTCTCTTCAAAGGTAAACGAAGGGGCTGTAATCTATAAGAC
ATACGCCGGTTCACCAGCACGTAATGCCGGTTTGAAGAAGTACGATGTTATTACTAAGTTGGATGGCACTAAGATTACCA
GTGTGGCAACGCTGCGAGATAAGTTATATAAACTCAAAGTCGGCGATTCAGTTAAAATCACATGGTACCGAGGTAACACT
CAGAAAACAGGAACAATCAAGCTAACAGAAACAACCAGTGAGTTGAGTTCCGAAGCTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(208-414)

Trypsin-like peptidase domain (Trypsin_2)

(122-268)

PDZ domain (PDZ_2)

(311-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

49.148

97.857

0.481
  htrA Streptococcus gordonii str. Challis substr. CH1

44.365

99.286

0.44
  htrA Streptococcus mitis NCTC 12261

43.796

97.857

0.429
  htrA Streptococcus pneumoniae Rx1

46.571

83.333

0.388
  htrA Streptococcus pneumoniae D39

46.571

83.333

0.388
  htrA Streptococcus pneumoniae R6

46.571

83.333

0.388
  htrA Streptococcus pneumoniae TIGR4

46.571

83.333

0.388

Multiple sequence alignment