Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A9237_RS10210 Genome accession   NZ_CP019959
Coordinates   2237137..2237682 (+) Length   181 a.a.
NCBI ID   WP_078608122.1    Uniprot ID   -
Organism   Vibrio owensii strain XSBZ03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2232137..2242682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9237_RS10195 (A9237_10195) uvrA 2232203..2235025 (-) 2823 WP_078608121.1 excinuclease ABC subunit UvrA -
  A9237_RS10200 (A9237_10200) galU 2235164..2236036 (-) 873 WP_009707668.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  A9237_RS10205 (A9237_10205) qstR 2236199..2236843 (-) 645 WP_009707667.1 LuxR C-terminal-related transcriptional regulator Regulator
  A9237_RS10210 (A9237_10210) ssb 2237137..2237682 (+) 546 WP_078608122.1 single-stranded DNA-binding protein Machinery gene
  A9237_RS10215 (A9237_10215) csrD 2237930..2239939 (+) 2010 WP_078608123.1 RNase E specificity factor CsrD -
  A9237_RS10220 (A9237_10220) - 2239951..2241399 (+) 1449 WP_041060962.1 MSHA biogenesis protein MshI -
  A9237_RS10225 (A9237_10225) gspM 2241396..2242046 (+) 651 WP_009707663.1 type II secretion system protein GspM -
  A9237_RS10230 (A9237_10230) - 2242039..2242368 (+) 330 WP_009707662.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20145.20 Da        Isoelectric Point: 4.9269

>NTDB_id=219198 A9237_RS10210 WP_078608122.1 2237137..2237682(+) (ssb) [Vibrio owensii strain XSBZ03]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKGTGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQQYNAPQQQQQQQA
PQQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=219198 A9237_RS10210 WP_078608122.1 2237137..2237682(+) (ssb) [Vibrio owensii strain XSBZ03]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACAATTGCAACTTCTGAGTCATGGCGTGACAAAGGGACTGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGCCAGCTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACTCAACAGAAGTTGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGTCGTGCTCAAGGTGGCGCACCTATGGGCGGTGGTCAGCCACAACAGCAACAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGCAATACAATGCTCCTCAGCAGCAGCAACAGCAACAGGCT
CCGCAGCAACCACAGCAGCAATACAACGAGCCACCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.781

100

0.807
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.591
  ssb Neisseria gonorrhoeae MS11

47.253

100

0.475
  ssb Neisseria meningitidis MC58

46.409

100

0.464

Multiple sequence alignment