Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   A9237_RS10205 Genome accession   NZ_CP019959
Coordinates   2236199..2236843 (-) Length   214 a.a.
NCBI ID   WP_009707667.1    Uniprot ID   A0A812F937
Organism   Vibrio owensii strain XSBZ03     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2231199..2241843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9237_RS10195 (A9237_10195) uvrA 2232203..2235025 (-) 2823 WP_078608121.1 excinuclease ABC subunit UvrA -
  A9237_RS10200 (A9237_10200) galU 2235164..2236036 (-) 873 WP_009707668.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  A9237_RS10205 (A9237_10205) qstR 2236199..2236843 (-) 645 WP_009707667.1 LuxR C-terminal-related transcriptional regulator Regulator
  A9237_RS10210 (A9237_10210) ssb 2237137..2237682 (+) 546 WP_078608122.1 single-stranded DNA-binding protein Machinery gene
  A9237_RS10215 (A9237_10215) csrD 2237930..2239939 (+) 2010 WP_078608123.1 RNase E specificity factor CsrD -
  A9237_RS10220 (A9237_10220) - 2239951..2241399 (+) 1449 WP_041060962.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24508.40 Da        Isoelectric Point: 9.5077

>NTDB_id=219197 A9237_RS10205 WP_009707667.1 2236199..2236843(-) (qstR) [Vibrio owensii strain XSBZ03]
MKKSAYARKLFLISMEDGAAKKVEALEKYTDINIPVISTQALMEANPKHRNKILLIDFSEHKELVQSIKNLPLIWKNFET
VVFNVPKRLTTDELLTFGQLKGIFYQDSSLEQIGEGLKEIVNGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=219197 A9237_RS10205 WP_009707667.1 2236199..2236843(-) (qstR) [Vibrio owensii strain XSBZ03]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTGATCAGCATGGAAGATGGTGCAGCGAAAAAGGTCGAAGCTCTGGA
AAAATACACTGACATCAACATCCCTGTCATTTCGACTCAAGCTTTGATGGAAGCCAACCCGAAACACCGCAATAAAATCT
TGTTGATCGACTTTAGTGAACACAAAGAACTGGTTCAATCGATCAAAAATCTGCCGTTGATCTGGAAAAATTTTGAAACC
GTGGTGTTCAATGTGCCAAAGCGTTTGACTACGGATGAATTACTGACATTTGGGCAATTGAAAGGCATTTTCTACCAAGA
TAGTTCTTTAGAACAAATTGGGGAGGGTTTAAAAGAGATCGTAAACGGTCAGAACTGGTTACCTCGCAATGTGACTAGCC
AACTCCTGCATTATTATCGCAATGTCATCAGTACCCACACAGCGCCAGCCACCGTCGATTTGACCATTCGTGAGCTGCAA
GTCTTACGCTGCCTTCAAGCGGGGGCATCGAACAATCAAATGGCGGAAGAGTTGTTCGTTAGTGAGTTCACCATCAAGTC
ACACCTGTATCAAATTTTTAAGAAGCTCTCAGTAAAAAACCGCGTACAAGCCATTGCTTGGGCTGACCAAAATCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812F937

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

95.794

100

0.958
  qstR Vibrio parahaemolyticus RIMD 2210633

89.72

100

0.897
  qstR Vibrio cholerae strain A1552

52.804

100

0.528

Multiple sequence alignment