Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A9237_RS08190 Genome accession   NZ_CP019959
Coordinates   1812146..1813669 (-) Length   507 a.a.
NCBI ID   WP_078608017.1    Uniprot ID   -
Organism   Vibrio owensii strain XSBZ03     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1807146..1818669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9237_RS08170 (A9237_08170) - 1808432..1809418 (+) 987 WP_078608711.1 serine/threonine protein kinase -
  A9237_RS08175 (A9237_08175) - 1809453..1810055 (+) 603 WP_005440776.1 thiol:disulfide interchange protein DsbA/DsbL -
  A9237_RS08180 (A9237_08180) - 1810097..1810975 (-) 879 WP_078608015.1 acyltransferase -
  A9237_RS08185 (A9237_08185) - 1811140..1812096 (+) 957 WP_078608016.1 DUF2860 domain-containing protein -
  A9237_RS08190 (A9237_08190) comM 1812146..1813669 (-) 1524 WP_078608017.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A9237_RS08195 (A9237_08195) ilvG 1814132..1815778 (+) 1647 WP_078608018.1 acetolactate synthase 2 catalytic subunit -
  A9237_RS08200 (A9237_08200) ilvM 1815790..1816074 (+) 285 WP_005440786.1 acetolactate synthase 2 small subunit -
  A9237_RS08205 (A9237_08205) ilvE 1816087..1817025 (+) 939 WP_009708024.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55033.26 Da        Isoelectric Point: 9.8258

>NTDB_id=219187 A9237_RS08190 WP_078608017.1 1812146..1813669(-) (comM) [Vibrio owensii strain XSBZ03]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRAVKGVLPAALAANKKQRRLVVPHANGDQAALVGKDQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKEIKKHSRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMNV
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQVRTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKQRVNQARESMVKRSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=219187 A9237_RS08190 WP_078608017.1 1812146..1813669(-) (comM) [Vibrio owensii strain XSBZ03]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCGTCGGTAAGCGTGGAAGTCCACATCAGTAA
TGGGATGCCGGGCTTTACGCTAGTGGGTCTACCGGAAACCACAGTAAAAGAATCGAAAGATCGCGTCCGCAGTGCGATCG
TTAATTCCAACTTTCAATTCCCTGCCAAGCGAATTACGGTAAATTTGGCACCTGCGGATCTGCCCAAAGAAGGTGGACGC
TTCGATCTGCCGATTGCATTAGGGATTTTGGCAGCTTCAGAACAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAATTAGCCCTTTCTGGTGGATTAAGAGCTGTAAAAGGCGTGCTGCCCGCTGCGTTGGCTGCGAACAAAAAACAGC
GCCGTTTAGTAGTGCCTCATGCCAATGGTGATCAAGCGGCATTAGTGGGTAAAGATCAGCACAAATCTGCTCAATCGCTA
TTGGAAGTTTGTGCTGAGTTGTGTGGTCAGCATCAATTGAATTTGTATCAAACCCCGAAGAAAAAAGAGATCAAAAAACA
CAGCCGAGATTTGCAAGACATCATCGGTCAACAGCAAGGTAAACGCGCTTTAGAGATCGCTGCAGCAGGCAATCACAATC
TATTGTTTCTTGGCCCGCCTGGTACGGGAAAAACCATGCTGGCATCACGCCTGTGTGACTTGTTACCTGAGATGAATGTT
GAAGAGGCAATGGAAACCGCTTCTGTGGCATCACTGACCCAAAGTGAAATCAACGAGCACAACTGGAAGACGCGACCGTT
TCGCGCGCCGCACCATTCTAGCTCAATGGCAGCGCTCGTGGGGGGCGGTTCTGTGCCTAGGCCGGGTGAGATTTCATTAG
CGCACAATGGGTTACTGTTCCTAGATGAGATGCCTGAGTTTGACCGTAAGGTGCTCGACTCTTTACGTGAGCCATTGGAG
TCTGGTGAAATCATTATCTCTCGCGCGCAGGGTAAAACCCGCTTTCCAGCTCGATTCCAATTGGTTGGCGCATTAAATCC
AAGCCCGACAGGGTATTACGAGGGCAATCAAGTTCGGACAAACCCGCAAGCCATCCTGCGTTACCTTGGTCGGTTATCAG
GCCCGCTTCTTGACCGCTTTGATATGTCGTTAGAGATTCCCGCATTGCCAAAAGGCACACTTGCTGAAGGGGGCGATCGA
GGAGAGCCTACCGCTGTGGTTAAGCAAAGAGTCAATCAGGCCAGAGAAAGCATGGTGAAACGCAGTGGGAAAGTGAACGC
ATTATTGGGTAGTCGAGAGATTGAAGCCTTTTGCCCGCTGCAAAAAAGCGACGCTGAGTTTTTAGAAAATGCGCTGCATC
GACTTGGATTATCGATTCGAGCTTACCATCGCATCATCAAAGTCGCGCGTACTATTGCTGATCTCGAAGGCTCACCGCAA
ATTGAGCGAACTCATCTGGCAGAAGCTTTGGGTTATCGAGCAATGGATAGGCTTCTCAAGCAGTTGACGGCTCAAGCGGT
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

96.647

100

0.966
  comM Vibrio cholerae strain A1552

84.615

100

0.846
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

49.398

98.225

0.485
  comM Legionella pneumophila strain ERS1305867

49.398

98.225

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.874

99.803

0.438

Multiple sequence alignment