Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B2J77_RS20640 Genome accession   NZ_CP019952
Coordinates   4561748..4563238 (+) Length   496 a.a.
NCBI ID   WP_058638859.1    Uniprot ID   A0AAJ0LJA2
Organism   Pseudomonas parafulva strain PRS09-11288     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4556748..4568238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2J77_RS20620 (B2J77_20840) - 4557132..4558463 (-) 1332 WP_058602806.1 ammonium transporter -
  B2J77_RS20625 (B2J77_20845) glnK 4558511..4558849 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  B2J77_RS20630 (B2J77_20850) - 4559213..4559470 (+) 258 WP_058602805.1 accessory factor UbiK family protein -
  B2J77_RS20635 (B2J77_20855) - 4559506..4561515 (-) 2010 WP_078479464.1 DUF4034 domain-containing protein -
  B2J77_RS20640 (B2J77_20860) comM 4561748..4563238 (+) 1491 WP_058638859.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B2J77_RS20645 (B2J77_20865) - 4563356..4564132 (+) 777 WP_058638858.1 alpha/beta fold hydrolase -
  B2J77_RS20650 (B2J77_20870) - 4564132..4564929 (+) 798 WP_058638857.1 SDR family NAD(P)-dependent oxidoreductase -
  B2J77_RS20655 (B2J77_20875) - 4565060..4565971 (+) 912 WP_078479337.1 LysR substrate-binding domain-containing protein -
  B2J77_RS20660 (B2J77_20880) - 4566173..4568014 (-) 1842 WP_058602800.1 amidohydrolase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52660.37 Da        Isoelectric Point: 7.5368

>NTDB_id=219131 B2J77_RS20640 WP_058638859.1 4561748..4563238(+) (comM) [Pseudomonas parafulva strain PRS09-11288]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPARRITQNLAPADLPKDGGR
YDLAIALGILAADAQVPVGALTELECLGELALSGTLRPVQGVLPAALAAREAGRALVVPRENAEEASLASGLVVYAVGHL
LELVAHLNGQVPLPAYAANGLLLDPRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQISRYRNKLSGPLLDRIDLHLTVARESTTLNNRPCG
QSSADVALQVAHARDVQQRRQGCANAFLDLDGLRQHCSLAAPDQAWLEGACERLTLSLRAAHRLLKVARTLADLEGCTAI
GRAHLAEALQYRPGGG

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=219131 B2J77_RS20640 WP_058638859.1 4561748..4563238(+) (comM) [Pseudomonas parafulva strain PRS09-11288]
ATGTCTTTAGCCCTTGTCCACAGCCGCGCCCAGGTAGGCGTACAGGCCCCGGCCGTCAGCGTCGAAACCCATTTGGCCAA
TGGCTTGCCTCATCTCACATTAGTCGGTTTGCCCGAAACCACGGTCAAGGAAAGCAAGGACCGCGTGCGCAGTGCCATCG
TCAACAGTGGCTTGAATTACCCTGCGCGGCGCATCACGCAAAACCTCGCACCCGCCGACCTGCCCAAGGACGGTGGCCGC
TATGACCTGGCCATCGCCTTGGGCATCCTGGCGGCCGACGCCCAGGTGCCCGTTGGTGCCCTGACCGAGCTCGAATGCCT
GGGCGAGCTGGCGCTGTCGGGCACGTTGCGGCCGGTGCAGGGCGTCTTGCCCGCAGCACTCGCCGCACGCGAGGCTGGCC
GAGCGCTGGTAGTACCCCGTGAAAATGCCGAGGAAGCCAGCCTTGCCAGCGGTTTGGTGGTGTATGCCGTCGGCCATCTA
TTGGAGCTGGTGGCCCATCTGAACGGGCAGGTACCGCTACCTGCCTATGCCGCCAATGGCTTGCTCCTGGACCCTCGCCC
CTATCCCGACCTGAGCGAGGTGCAGGGGCAACTGGCCGCCAAACGCGCGCTGCTACTGGCCGCTGCCGGGGCGCACAACC
TGCTCTTCACCGGGCCGCCGGGCACTGGCAAAACCTTGTTGGCCAGCCGCCTGCCGGGCCTGCTGCCACCGCTGGATGAG
CATGAAGCCCTGGAAGTCGCCGCCATCCAGTCGGTCAGCGGCCACACCCCGCTGAGCAGCTGGCCACAGCGACCGTTTCG
CCATCCTCACCATTCCGCCTCCGGGCCTGCGCTGGTGGGTGGCGGAAGCCGGCCGCAGCCCGGGGAAATCACCTTGGCCC
ACCACGGGGTGCTGTTTCTGGACGAGTTGCCCGAATTCGAGCGCCGGGTACTTGAAGTGCTGCGTGAACCCTTGGAATCT
GGCGAGATCGTGATCGCCAGGGCGCGGGATAAAGTGCGCTTCCCTGCCCGCTTTCAGTTAGTCGCCGCCATGAACCCCTG
CCCCTGCGGCTACTTGGGCGACCCCACAGGGCGATGCCGTTGCAGCACCGAACAAATCTCCCGTTATCGCAATAAACTGT
CAGGCCCGCTGCTGGACCGGATCGACTTGCACCTGACCGTGGCGCGCGAGAGCACCACACTCAACAATCGGCCCTGCGGG
CAAAGCAGTGCCGACGTCGCCCTCCAGGTCGCGCACGCCCGGGACGTGCAACAGCGTCGGCAAGGGTGCGCCAATGCATT
CCTCGACCTGGACGGGCTGCGCCAGCACTGTAGCTTGGCAGCACCTGATCAGGCTTGGCTGGAAGGCGCCTGTGAACGGC
TGACGCTGTCGCTGCGAGCAGCACACCGATTGCTCAAGGTCGCCAGGACACTGGCAGACCTTGAGGGATGCACGGCGATT
GGCCGGGCGCATCTGGCCGAGGCCCTGCAGTACCGTCCTGGGGGTGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.556

99.798

0.554
  comM Haemophilus influenzae Rd KW20

55

100

0.554
  comM Vibrio cholerae strain A1552

54.949

99.798

0.548
  comM Glaesserella parasuis strain SC1401

53.8

100

0.542
  comM Legionella pneumophila str. Paris

48.992

100

0.49
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.472

Multiple sequence alignment