Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B2D37_RS21190 Genome accession   NZ_CP019947
Coordinates   4655562..4656062 (+) Length   166 a.a.
NCBI ID   WP_079204546.1    Uniprot ID   -
Organism   Pseudomonas sp. CC6-YY-74     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4650562..4661062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2D37_RS21180 uvrA 4651015..4653855 (-) 2841 WP_079204544.1 excinuclease ABC subunit UvrA -
  B2D37_RS21185 - 4654155..4655543 (+) 1389 WP_079204545.1 MFS transporter -
  B2D37_RS21190 ssb 4655562..4656062 (+) 501 WP_079204546.1 single-stranded DNA-binding protein Machinery gene
  B2D37_RS21195 - 4656201..4657100 (-) 900 WP_079204547.1 LysR substrate-binding domain-containing protein -
  B2D37_RS21200 - 4657285..4658925 (+) 1641 WP_079204548.1 5-guanidino-2-oxopentanoate decarboxylase -
  B2D37_RS21205 - 4658919..4660382 (+) 1464 WP_079204549.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18614.72 Da        Isoelectric Point: 5.9540

>NTDB_id=219101 B2D37_RS21190 WP_079204546.1 4655562..4656062(+) (ssb) [Pseudomonas sp. CC6-YY-74]
MARGVNKVILIGTCGQDPETRYLPSGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLIGGRPDNAGGDSAPRQQRPAPQREQQQQQQQAPRPAPQQQAKPAQDFDSF
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=219101 B2D37_RS21190 WP_079204546.1 4655562..4656062(+) (ssb) [Pseudomonas sp. CC6-YY-74]
ATGGCCCGTGGGGTTAACAAAGTTATTCTGATCGGTACCTGCGGACAGGATCCGGAAACGCGTTATCTGCCCAGCGGCAA
CGCAGTGACCAACCTGAGTCTCGCCACCAGCGAGCAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAGT
GGCACCGTGTCTCGCTGTTCGGCAAGGTTGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTATATCGAA
GGCAAGCTGCAGACTCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAGATCGTCGTCGACATGCAGGGCAC
CATGCAGCTGATTGGTGGCCGTCCGGATAACGCCGGTGGCGATTCGGCGCCACGTCAGCAGCGCCCGGCGCCGCAACGTG
AACAGCAGCAGCAGCAGCAGCAGGCGCCGCGTCCGGCCCCGCAGCAGCAGGCCAAGCCGGCGCAGGATTTCGACAGTTTT
GACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56

100

0.59
  ssb Glaesserella parasuis strain SC1401

45.946

100

0.512
  ssb Neisseria meningitidis MC58

46.961

100

0.512
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.506

Multiple sequence alignment