Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B2D37_RS17240 Genome accession   NZ_CP019947
Coordinates   3793708..3795204 (+) Length   498 a.a.
NCBI ID   WP_079203838.1    Uniprot ID   -
Organism   Pseudomonas sp. CC6-YY-74     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3788708..3800204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2D37_RS17215 sutA 3789410..3789736 (-) 327 WP_079203834.1 transcriptional regulator SutA -
  B2D37_RS17220 - 3789971..3791221 (-) 1251 WP_079203835.1 ammonium transporter -
  B2D37_RS17225 - 3791302..3792615 (-) 1314 WP_079203836.1 ammonium transporter -
  B2D37_RS17230 glnK 3792655..3792993 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  B2D37_RS17235 - 3793401..3793673 (+) 273 WP_079203837.1 accessory factor UbiK family protein -
  B2D37_RS17240 comM 3793708..3795204 (+) 1497 WP_079203838.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B2D37_RS17245 - 3795210..3796136 (-) 927 WP_079203839.1 LysR substrate-binding domain-containing protein -
  B2D37_RS17250 - 3796262..3797647 (+) 1386 WP_079203840.1 NorM family multidrug efflux MATE transporter -
  B2D37_RS17255 - 3797755..3799428 (-) 1674 WP_079205016.1 bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52645.57 Da        Isoelectric Point: 8.2219

>NTDB_id=219096 B2D37_RS17240 WP_079203838.1 3793708..3795204(+) (comM) [Pseudomonas sp. CC6-YY-74]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPSLALVGLPETAVKESKDRVRSAILNSAFDFPPRRITLNLAPADLPKDGGR
FDLAIALGILAASGQVPSTALEQIECLGELALSGAVRPVRGVLPAALAARAAGRSLVVPKANAEEASLASGLVVIAVDHL
LELAAHLNGQAPIAPYQSLGLLHRSLPYPDLAEVQGQVAAKRALLVAAAGSHNLLLTGPPGTGKTLLASRLPGLLPPLNE
QEALEVAAIHSVASHTPLDAWPQRPFRNPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GQIVIARARDKVRFPARFQLVAAMNPCPCGFLGDPSGRCRCSTEQIQRYRGKLSGPLLDRIDLHVTVARETTALHVPPSD
GADTATGAALVARARQRQILRQGVANAFLDLPGLRQHCSLHAADQGWLESACERLGLSLRAAHRVLKVARTLADLEQVEQ
IARSHLAEALQYRGHPQS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=219096 B2D37_RS17240 WP_079203838.1 3793708..3795204(+) (comM) [Pseudomonas sp. CC6-YY-74]
ATGTCCCTGGCCATAGTCCACAGCCGCGCCCAAGTCGGCGTCGAAGCGCCCGCCGTAACCGTCGAGGCGCACCTGGCCAA
TGGCTTGCCGTCGCTGGCGCTGGTCGGCCTGCCCGAGACCGCGGTCAAGGAAAGCAAAGACCGGGTGCGCAGCGCCATCC
TCAACTCCGCCTTCGACTTCCCGCCGCGCCGCATCACCCTGAACCTGGCCCCAGCCGACTTGCCCAAGGACGGCGGCCGC
TTCGACCTGGCGATTGCCTTGGGGATTCTCGCCGCCAGCGGCCAGGTGCCAAGCACCGCCCTGGAGCAAATCGAGTGCCT
GGGTGAATTGGCCTTATCCGGCGCCGTGCGCCCAGTGCGGGGCGTACTGCCCGCCGCCCTGGCGGCCCGCGCCGCCGGAC
GCTCCCTGGTGGTGCCGAAAGCCAACGCCGAGGAAGCCAGCCTGGCCTCCGGGCTGGTGGTGATCGCCGTGGACCACTTG
CTCGAACTGGCCGCGCACCTCAATGGCCAAGCGCCAATCGCGCCCTATCAGTCTCTCGGCTTGCTGCACCGCAGCCTGCC
CTATCCCGACCTGGCCGAAGTGCAGGGGCAAGTCGCCGCCAAGCGCGCCCTGCTGGTCGCCGCAGCCGGCTCGCACAACC
TGCTGTTGACCGGCCCACCGGGCACCGGCAAGACCCTGCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGCCACTGAACGAG
CAGGAGGCCCTGGAAGTCGCCGCCATCCATTCGGTGGCCAGCCACACCCCACTGGACGCCTGGCCCCAGCGGCCCTTTCG
CAACCCCCATCACAGCGCCTCCGGCCCGGCCTTGGTCGGCGGCGGCAGCCGTCCGCAACCCGGCGAAATCACCCTGGCCC
ATCAGGGCGTGTTGTTTCTGGATGAACTGCCCGAGTTCGACCGCAAGGTGTTGGAGGTGCTGCGCGAACCCCTGGAAAGC
GGACAGATCGTCATCGCCCGGGCCCGTGACAAGGTGCGTTTCCCGGCGCGCTTCCAGCTGGTCGCGGCAATGAATCCCTG
CCCCTGCGGCTTTCTCGGCGATCCCAGCGGCCGCTGTCGCTGCAGCACCGAACAGATCCAGCGCTACCGCGGCAAACTGT
CTGGACCCTTACTCGACCGCATCGACCTGCATGTCACGGTGGCGCGGGAAACCACCGCCCTGCATGTCCCCCCCAGCGAC
GGTGCCGACACGGCTACCGGTGCCGCCCTGGTGGCGCGCGCTCGGCAACGGCAAATACTGCGCCAGGGCGTGGCCAATGC
CTTCCTCGACCTGCCCGGCCTGCGCCAGCACTGCAGCCTGCACGCCGCCGATCAGGGCTGGCTGGAAAGCGCCTGCGAAC
GCCTTGGCCTATCGTTACGCGCCGCGCACCGGGTGCTCAAGGTGGCACGTACCCTGGCCGACCTCGAACAGGTCGAACAG
ATCGCCCGCAGCCATCTGGCTGAGGCGCTGCAATACCGCGGTCATCCGCAGAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.96

99.398

0.556
  comM Vibrio campbellii strain DS40M4

55.556

99.398

0.552
  comM Glaesserella parasuis strain SC1401

54.509

100

0.546
  comM Haemophilus influenzae Rd KW20

53.4

100

0.536
  comM Legionella pneumophila str. Paris

49.098

100

0.492
  comM Legionella pneumophila strain ERS1305867

49.098

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.726

100

0.462

Multiple sequence alignment