Detailed information NTG0219006

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SPSF3K_RS10560
• Genome accession: NZ_CP025420
• Coordinates: 2071993..2072991 (-)
• Length: 332 a.a.
• NCBI ID: WP_003105437.1
• Uniprot ID: A0ABN0INU7
• Organism: Streptococcus parauberis strain SPOF3K
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2066993..2077991

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPSF3K_RS10545 (SPSF3K_02134)	-	2069136..2070914 (-)	1779	WP_003107454.1	acyltransferase family protein	-
SPSF3K_RS10550 (SPSF3K_02135)	-	2070911..2071312 (-)	402	WP_003105881.1	membrane protein	-
SPSF3K_RS10555 (SPSF3K_02136)	-	2071341..2071769 (-)	429	WP_003107455.1	low molecular weight protein-tyrosine-phosphatase	-
SPSF3K_RS10560 (SPSF3K_02137)	ruvB	2071993..2072991 (-)	999	WP_003105437.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SPSF3K_RS11250 (SPSF3K_02138)	-	2073126..2073224 (-)	99	WP_199764314.1	quorum-sensing system DWW-type pheromone	-
SPSF3K_RS10565 (SPSF3K_02139)	comR	2073290..2074207 (-)	918	WP_003107457.1	helix-turn-helix transcriptional regulator	Regulator
SPSF3K_RS10570 (SPSF3K_02140)	purB	2074324..2075616 (-)	1293	WP_003108970.1	adenylosuccinate lyase	-
SPSF3K_RS10575 (SPSF3K_02141)	purK	2075626..2076711 (-)	1086	WP_003108971.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
SPSF3K_RS10580 (SPSF3K_02142)	purE	2076698..2077186 (-)	489	WP_003107462.1	5-(carboxyamino)imidazole ribonucleotide mutase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37561.05 Da
• Isoelectric Point: 4.5381

>NTDB_id=219006 SPSF3K_RS10560 WP_003105437.1 2071993..2072991(-) (ruvB) [Streptococcus parauberis strain SPOF3K]
MTRILDEELMGDEALVERTLRPQYLREYIGQDKVKDQLTIFIEAAKMRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRMPMVVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQVDDLTEIVERTADIFEMEIVHEAAHELARRSRGTPRIANRLLKRVRDYAQIMGDGVIT
DTITDKALDMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATEK
AYRHLNYPYLEK

Nucleotide

• Length: 999 bp

>NTDB_id=219006 SPSF3K_RS10560 WP_003105437.1 2071993..2072991(-) (ruvB) [Streptococcus parauberis strain SPOF3K]
ATGACTAGAATTTTAGATGAAGAATTAATGGGTGATGAAGCTTTAGTTGAGCGCACCCTTCGTCCTCAATATTTAAGAGA
GTATATCGGACAGGATAAGGTGAAAGACCAGCTGACTATTTTTATTGAAGCCGCCAAAATGCGTGATGAATCACTAGACC
ACGTGCTCTTGTTTGGGCCTCCTGGACTTGGTAAAACAACCATGGCTTTTGTGATTGCTAATGAACTAGGTGTCAACCTC
AAGCAAACGTCTGGTCCAGCAATTGAAAAGGCTGGTGATTTGGTAGCTGTTTTGAATGACTTGGAACCAGGAGATGTGCT
TTTCATTGATGAAATCCACCGGATGCCAATGGTAGTTGAAGAAGTCCTCTACAGTGCTATGGAAGACTTCTATATTGATA
TTATGATTGGGGCTGGTGATACAAGCCGTAGTGTCCATTTGGATTTACCTCCTTTTACCTTAATTGGAGCAACTACAAGG
GCAGGGATGCTCTCTAATCCTTTGCGTGCCCGTTTTGGAATCACTGGACACATGGAATATTACCAAGTTGATGATCTCAC
AGAAATTGTCGAACGGACAGCTGATATCTTTGAAATGGAAATTGTCCATGAAGCAGCCCATGAATTGGCCCGCCGAAGTC
GAGGAACACCTCGTATAGCCAATCGTTTATTGAAGCGCGTGCGCGACTATGCCCAAATTATGGGTGATGGGGTAATTACA
GATACTATTACTGACAAAGCTTTAGATATGCTTGATGTTGACCATGAGGGATTGGACTACGTCGATCAGAAAATTTTACG
TACGATGATTGAAATGTACAATGGTGGACCTGTTGGTCTTGGGACACTGTCAGTGAATATTGCTGAGGAAAGAGACACAG
TTGAAGATATGTATGAACCCTATCTGATTCAAAAGGGCTTTATCATGCGAACACGGACTGGCCGTGTTGCGACAGAAAAA
GCATATCGTCATTTGAATTATCCTTACCTTGAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-326)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.361	100	0.904
ruvB	Streptococcus pneumoniae R6	90.06	100	0.901
ruvB	Streptococcus pneumoniae D39	90.06	100	0.901
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.111	97.59	0.596
ruvB	Helicobacter pylori 26695	49.39	98.795	0.488
ruvB	Synechocystis sp. PCC 6803	50	93.373	0.467