Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B2B88_RS13255 Genome accession   NZ_CP019931
Coordinates   2797237..2798739 (+) Length   500 a.a.
NCBI ID   WP_010928622.1    Uniprot ID   Q7W7D0
Organism   Bordetella parapertussis strain E843     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2792237..2803739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2B88_RS13235 (B2B88_13200) amt 2794553..2795791 (-) 1239 WP_010928620.1 ammonium transporter -
  B2B88_RS13240 (B2B88_13205) - 2795817..2796155 (-) 339 WP_003812839.1 P-II family nitrogen regulator -
  B2B88_RS13250 (B2B88_13210) - 2796864..2797130 (+) 267 WP_041937222.1 accessory factor UbiK family protein -
  B2B88_RS13255 (B2B88_13215) comM 2797237..2798739 (+) 1503 WP_010928622.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B2B88_RS13260 (B2B88_13220) rpmI 2799062..2799259 (+) 198 WP_003812834.1 50S ribosomal protein L35 -
  B2B88_RS13265 (B2B88_13225) rplT 2799275..2799634 (+) 360 WP_003812832.1 50S ribosomal protein L20 -
  B2B88_RS13270 (B2B88_13230) pheS 2799709..2800731 (+) 1023 WP_010928623.1 phenylalanine--tRNA ligase subunit alpha -
  B2B88_RS13275 (B2B88_13235) pheT 2800744..2803161 (+) 2418 WP_010928624.1 phenylalanine--tRNA ligase subunit beta -
  B2B88_RS13280 (B2B88_13240) - 2803167..2803508 (+) 342 WP_003812826.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52207.25 Da        Isoelectric Point: 8.6708

>NTDB_id=218851 B2B88_RS13255 WP_010928622.1 2797237..2798739(+) (comM) [Bordetella parapertussis strain E843]
MTLAVLASRAIAGWQAPAVRVETHLGSGLPAFAIVGLPDVEVRESRERVRAAIQNSGFDFPPGRITVNLSPADLPKASAR
FDLPIALGILLASGQVAASAAQTAALPDCVWAAELSLSGALVPLAAPLALALAVAREQPGATLVLPAGSAAVAAWVPGIR
VLAAHTLGEAAAYLAGHAELAPAERRSWPEVEPGPCLSDVRGQPAARRALEVAAAGGHSLLMCGPPGAGKSMLAQRLPGL
LPPLEQRQALEVAAIAGAGGAPEVLRGQPPFRAPHHSASAAALVGGGARPRPGEISLAHHGVLFLDELPEFERRALESLR
EPLETGKVVISQALHSVEYPAVFQLVAAMNPCPCGWRGHASKACRCTPDQVRRYAARVSGPLVDRIDLWIELPATEPQWL
AEPPGEPSLPVRERVARCRQRQLARQGCLNAKLSGPALDAHCALGAAARTLLQQAMRRLGGSARAAHRALRVARTLADLA
HEPEIGAAHIAEAVQYRRPT

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=218851 B2B88_RS13255 WP_010928622.1 2797237..2798739(+) (comM) [Bordetella parapertussis strain E843]
ATGACCCTGGCCGTATTGGCCAGCCGGGCGATCGCCGGCTGGCAGGCGCCCGCCGTGCGCGTCGAGACCCATCTGGGCAG
CGGCCTGCCCGCTTTTGCCATCGTCGGGCTGCCCGACGTCGAGGTCCGCGAAAGCCGCGAACGGGTGAGGGCGGCAATCC
AGAACAGCGGCTTCGATTTCCCGCCCGGCCGCATTACCGTCAACCTGTCGCCCGCTGACCTGCCCAAGGCCTCGGCGCGC
TTCGATTTGCCCATTGCGCTGGGTATCCTGCTGGCCAGCGGCCAGGTGGCCGCCAGCGCCGCGCAAACGGCGGCGCTGCC
CGATTGCGTGTGGGCGGCCGAACTGTCGCTGTCGGGCGCCCTGGTGCCGCTGGCCGCGCCCTTGGCCCTGGCGCTGGCCG
TGGCACGCGAGCAGCCGGGTGCGACGCTGGTGCTGCCGGCTGGCAGCGCCGCCGTGGCCGCATGGGTGCCGGGCATCCGG
GTGCTGGCTGCCCATACGCTGGGCGAGGCGGCGGCGTACCTGGCCGGGCACGCCGAGCTGGCGCCAGCCGAGCGCCGCAG
CTGGCCCGAGGTCGAGCCCGGTCCGTGCCTGTCCGACGTGCGGGGCCAGCCGGCTGCCCGGCGCGCCTTGGAAGTGGCGG
CCGCCGGCGGCCACAGCCTCTTGATGTGCGGGCCGCCCGGGGCGGGCAAAAGCATGCTGGCGCAACGCCTGCCGGGCCTG
CTGCCGCCGCTGGAGCAGCGCCAGGCGCTGGAAGTGGCGGCCATCGCGGGCGCCGGCGGAGCGCCCGAGGTCCTGCGCGG
CCAGCCGCCGTTTCGGGCCCCCCATCACTCCGCCTCGGCCGCCGCCCTGGTGGGCGGCGGCGCCAGGCCTCGCCCGGGCG
AGATCAGCCTGGCGCACCATGGCGTGCTGTTCCTGGACGAACTGCCCGAGTTCGAGCGTCGCGCCCTGGAGTCTCTGCGC
GAGCCGCTGGAGACCGGCAAGGTCGTCATCTCCCAGGCGCTGCACAGCGTCGAGTATCCCGCCGTATTCCAGCTGGTGGC
GGCCATGAATCCGTGCCCCTGCGGCTGGCGCGGGCATGCGTCGAAGGCCTGCCGCTGCACGCCGGACCAGGTGCGCCGCT
ATGCGGCGCGCGTGTCCGGGCCGCTGGTCGATCGCATAGACCTGTGGATCGAGCTGCCCGCCACCGAGCCGCAGTGGCTG
GCCGAACCGCCGGGCGAGCCCTCCCTTCCGGTGCGCGAGCGCGTGGCGCGCTGCCGCCAGCGGCAGTTGGCCCGCCAGGG
CTGCCTGAACGCCAAGCTGTCCGGCCCGGCGCTCGATGCGCATTGCGCCCTGGGCGCCGCGGCCCGCACGCTGCTGCAGC
AGGCCATGCGGCGCCTGGGCGGCTCGGCGCGCGCCGCCCATCGCGCGCTCAGGGTGGCGCGCACCCTGGCCGACCTCGCG
CACGAGCCGGAGATCGGCGCCGCCCATATCGCCGAAGCGGTACAGTACCGCCGTCCCACGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-397)

Subunit ChlI of Mg-chelatase (ChlI)

(21-147)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7W7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.907

100

0.492
  comM Vibrio campbellii strain DS40M4

48.008

100

0.482
  comM Legionella pneumophila strain ERS1305867

45.117

100

0.462
  comM Legionella pneumophila str. Paris

45.117

100

0.462
  comM Haemophilus influenzae Rd KW20

45.365

100

0.46
  comM Glaesserella parasuis strain SC1401

44.685

100

0.454
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.961

100

0.428

Multiple sequence alignment