Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B2G52_RS00155 Genome accession   NZ_CP019894
Coordinates   28457..29953 (-) Length   498 a.a.
NCBI ID   WP_003713388.1    Uniprot ID   -
Organism   Neisseria lactamica strain Y92-1009     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 23457..34953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2G52_RS00120 (B2G52_00120) - 23690..24838 (+) 1149 WP_003713396.1 class I SAM-dependent methyltransferase -
  B2G52_RS00135 (B2G52_00135) - 25477..25743 (-) 267 WP_078835824.1 hypothetical protein -
  B2G52_RS00140 (B2G52_00140) - 25978..26799 (-) 822 WP_003713393.1 undecaprenyl-diphosphate phosphatase -
  B2G52_RS00145 (B2G52_00145) - 26833..27474 (-) 642 WP_003713392.1 thiol:disulfide interchange protein DsbA/DsbL -
  B2G52_RS00150 (B2G52_00150) ftsN 27477..28352 (-) 876 WP_045750249.1 cell division protein FtsN -
  B2G52_RS00155 (B2G52_00155) comM 28457..29953 (-) 1497 WP_003713388.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B2G52_RS00160 (B2G52_00160) - 29967..30287 (-) 321 WP_003713386.1 accessory factor UbiK family protein -
  B2G52_RS00165 (B2G52_00165) - 30342..30608 (+) 267 WP_230455317.1 hypothetical protein -
  B2G52_RS00170 (B2G52_00170) putP 30767..32293 (+) 1527 WP_045750248.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53530.67 Da        Isoelectric Point: 7.0036

>NTDB_id=218708 B2G52_RS00155 WP_003713388.1 28457..29953(-) (comM) [Neisseria lactamica strain Y92-1009]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECQVPQMPSENAKLPDLVDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSANVLERVIAARDKQYARQGKVNAALSVGELETIARIQKEAQEALGGLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVLKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=218708 B2G52_RS00155 WP_003713388.1 28457..29953(-) (comM) [Neisseria lactamica strain Y92-1009]
ATGTCGCTCGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCGCATTTCAACATCGTCGGACTGCCCGATACGGAAGTCAAAGAAAGCCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATCACCGTCAACCTGGCACCCGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATTCTTGCCGCATCGGGGCAGGTTGCGCCCGAAAAGCTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGCTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCCCATTTGAACGGCATCGAACCTTTGGCGCAAACCGAATGCCAAGTTCCTCAGATGCCGTCTGAAAA
CGCCAAACTGCCCGATCTCGTCGATGTCAAGGGTCAACACACTGCCCGCCTTGCTTTGGAAATCGCTGCCGCAGGCGGAC
ACAGCCTTTTGATGATGGGTCCGCCGGGAACGGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
ACCGAAGACGAATTGGTCGAAGTGTGGGCATTGCGTTCGCTCCTGCCCAACCACCAACAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCATCACAGCGCCAGCGCGGCGGCTATGGTCGGAGGCGGTTCGGACCCGCGTCCGGGCGAGATTTCAT
TGGCGCATCACGGCGTTTTGTTTTTGGACGAATTGCCCGAGTTCGACCGCAAAGTTTTGGAAGTGTTGCGCGAACCTTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCTGCCAAATTCCAGCTTGTCGCCGCCATGAA
CCCCTGCCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACACCCGAAAGCGTCGCGCGTTACCGCAGCA
AAATTTCCGGTCCGTTGCTTGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCAGGGGAAAGCAGTGCAAACGTTTTGGAACGCGTCATCGCCGCCCGTGACAAACAATACGCGCGGCAGGGCAAAGT
CAACGCCGCCTTGAGTGTCGGCGAACTCGAGACCATCGCACGCATCCAAAAAGAAGCGCAGGAAGCCTTGGGCGGATTGT
TGGAAAAACTCTCCCTCTCCGCCCGCAGCTTCCACCGCATCATGCGCGTGGCGCGTACGTTGGCGGATTTGGCAGGCGAC
GAAGAAGTCGGCAGAAGCCATGTTTTGAAAGCCATAGGTTTCCGCCGCGCTTTATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.187

100

0.536
  comM Vibrio campbellii strain DS40M4

52.716

99.799

0.526
  comM Glaesserella parasuis strain SC1401

49.602

100

0.5
  comM Haemophilus influenzae Rd KW20

49.9

100

0.5
  comM Legionella pneumophila str. Paris

47.316

100

0.478
  comM Legionella pneumophila strain ERS1305867

47.316

100

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.141

100

0.436

Multiple sequence alignment