Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B1F84_RS00790 Genome accession   NZ_CP019770
Coordinates   165223..166734 (+) Length   503 a.a.
NCBI ID   WP_131690293.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. DL-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 160223..171734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1F84_RS00745 (B1F84_00745) - 160267..160635 (+) 369 WP_131690291.1 YacL family protein -
  B1F84_RS00750 (B1F84_00750) - 160688..161314 (+) 627 WP_131690292.1 dUTP diphosphatase -
  B1F84_RS00755 (B1F84_00755) yrfG 161316..161963 (-) 648 WP_076920504.1 GMP/IMP nucleotidase -
  B1F84_RS00760 (B1F84_00760) nudE 162228..162800 (+) 573 WP_205988833.1 ADP compounds hydrolase NudE -
  B1F84_RS00765 (B1F84_00765) cysQ 162793..163590 (+) 798 WP_076920502.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  B1F84_RS00785 (B1F84_00785) - 164574..165188 (+) 615 WP_008108278.1 trimeric intracellular cation channel family protein -
  B1F84_RS00790 (B1F84_00790) comM 165223..166734 (+) 1512 WP_131690293.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B1F84_RS00795 (B1F84_00795) - 166739..167443 (-) 705 WP_008108280.1 response regulator transcription factor -
  B1F84_RS00800 (B1F84_00800) - 167609..170101 (-) 2493 WP_131690294.1 prolyl oligopeptidase family serine peptidase -
  B1F84_RS00805 (B1F84_00805) - 170183..171250 (+) 1068 WP_131690295.1 hemolysin family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55153.27 Da        Isoelectric Point: 6.9576

>NTDB_id=218263 B1F84_RS00790 WP_131690293.1 165223..166734(+) (comM) [Pseudoalteromonas sp. DL-6]
MSLARIFSRAQVGINAPEVMVEVHLGNGLPAFHIVGLPETSVKEAKDRVRSALENSQFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQIVCPDIHKYEFYGELALNGEIRAVNAILPSVLGAKEQNRCCFLPLENDSLASLVSGVKRKAVSSI
QEVWGDLLNQQPLPLNIVYPDCTQAPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMATIMPTMS
DDEAIDTAALYSIIGHSIDLTNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGTVTISRAARQMEFPAQFQLIAALNPSPTGCHHDKRATPDQVMRYLSRVSGPFIDRIDLQIELPRLSSVELQSTTTEE
TSAEVRARVEAAYVVQLKRQGKVNARLNNKEMNLHCELPPAELQFLARASEKLALSPRSYHRVIKVARTISDLKGAPQIS
LNELKEALNYRAFERLLSQLTQH

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=218263 B1F84_RS00790 WP_131690293.1 165223..166734(+) (comM) [Pseudoalteromonas sp. DL-6]
ATGTCGTTAGCCCGTATATTTTCTCGCGCGCAGGTGGGGATAAACGCCCCCGAGGTGATGGTTGAAGTACATTTAGGCAA
TGGTTTACCCGCCTTTCATATTGTCGGTTTACCCGAAACCTCGGTTAAAGAGGCCAAGGATAGAGTACGTAGTGCTCTTG
AAAACTCGCAATTTGGATTTCCCGATCAACGTATTACCGTTAATTTAGCGCCTGCCGATCTCCCTAAAGATGGTGGGCGA
TTTGACCTTGCGATTGCGGTAGGTATTTTGGTCGCATCGGGGCAAATAGTCTGCCCTGATATTCATAAGTATGAATTTTA
CGGTGAGCTTGCACTTAATGGTGAAATACGGGCGGTAAATGCCATTTTGCCTTCAGTGCTTGGTGCCAAAGAGCAAAATC
GTTGCTGTTTTCTGCCTCTTGAAAATGACAGTTTGGCCAGCCTAGTCAGTGGTGTAAAGCGAAAAGCCGTCAGTTCTATA
CAAGAGGTGTGGGGAGACTTGCTCAATCAACAACCTTTACCGCTCAATATTGTCTACCCTGATTGCACCCAAGCGCCAGA
CTTTTTACTCGATTTAAGTGATGTAAAAGGCCAACCCGGTGCTAAACGTGTATTAGAAATTGCCGCTGCTGGTGGGCATA
ACTTATTGTTTTTAGGTCCACCAGGAACAGGAAAATCAATGCTTGCGCAACGAATGGCTACCATAATGCCAACCATGTCT
GATGATGAAGCCATTGATACAGCGGCCTTATATTCAATTATTGGTCATTCAATTGATTTAACCAATTGGCGTCAGCGACC
GTTTCGCAATCCGCATCATACCTGTTCTGCGGTGGCGCTAGTGGGTGGCTCGTCTAACCCTAAGCCCGGTGAGATATCGT
TAGCGCATAATGGTGTGTTGTTTTTAGATGAGCTGCCTGAATTTGAGCGTAAAGTGCTGGATTCATTACGAGAGCCTATG
GAAACCGGAACAGTGACGATTTCGCGCGCGGCCAGACAAATGGAATTTCCAGCGCAGTTTCAGCTTATTGCAGCACTTAA
CCCTAGTCCAACTGGGTGTCATCATGATAAACGGGCGACACCCGATCAGGTAATGCGCTATTTATCGCGAGTATCGGGGC
CGTTTATTGACAGAATTGATTTGCAAATTGAACTACCAAGGTTGAGCAGCGTGGAGCTACAAAGTACAACTACAGAAGAA
ACCAGTGCTGAGGTGAGGGCACGAGTAGAAGCAGCTTATGTAGTTCAGCTTAAACGCCAAGGTAAAGTAAATGCGCGGTT
AAATAACAAAGAGATGAACTTGCACTGTGAGTTACCACCTGCAGAGCTGCAGTTTTTAGCCAGAGCCAGTGAAAAGCTGG
CGCTATCGCCGCGCTCTTATCATAGAGTAATCAAAGTGGCGCGGACGATAAGTGATTTAAAAGGTGCGCCACAAATCAGT
TTAAATGAGCTTAAAGAAGCGCTTAATTATCGGGCATTTGAGCGTTTATTATCGCAGTTAACCCAACACTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.754

100

0.559
  comM Haemophilus influenzae Rd KW20

54.043

100

0.545
  comM Glaesserella parasuis strain SC1401

53.953

100

0.543
  comM Vibrio campbellii strain DS40M4

54.167

100

0.543
  comM Legionella pneumophila str. Paris

50.198

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.198

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.897

100

0.421

Multiple sequence alignment