Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   XPE_RS18410 Genome accession   NZ_CP019725
Coordinates   4110584..4111978 (-) Length   464 a.a.
NCBI ID   WP_008575092.1    Uniprot ID   -
Organism   Xanthomonas perforans 91-118     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4100766..4110229 4110584..4111978 flank 355


Gene organization within MGE regions


Location: 4100766..4111978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XPE_RS18375 (XPE_18320) pilA/pilAI 4100766..4101158 (+) 393 WP_008576871.1 pilin Machinery gene
  XPE_RS18380 (XPE_18325) - 4101251..4101670 (+) 420 WP_033479197.1 pilin -
  XPE_RS18385 (XPE_18330) - 4101715..4103547 (+) 1833 WP_008576878.1 hypothetical protein -
  XPE_RS18390 (XPE_18335) - 4103669..4104367 (+) 699 WP_158070652.1 class I SAM-dependent methyltransferase -
  XPE_RS22190 (XPE_18340) - 4104385..4105278 (+) 894 WP_074053366.1 lysylphosphatidylglycerol synthase domain-containing protein -
  XPE_RS18395 - 4105270..4106436 (-) 1167 WP_077708931.1 glycosyltransferase -
  XPE_RS18400 (XPE_18350) - 4106429..4107286 (-) 858 WP_074053368.1 glycosyltransferase family 2 protein -
  XPE_RS18405 (XPE_18355) pilB 4107543..4109279 (+) 1737 WP_008575094.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XPE_RS18410 (XPE_18360) pilR 4110584..4111978 (-) 1395 WP_008575092.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50239.61 Da        Isoelectric Point: 6.5716

>NTDB_id=218106 XPE_RS18410 WP_008575092.1 4110584..4111978(-) (pilR) [Xanthomonas perforans 91-118]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAPGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLSDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAVPNGGAA
AEQREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGMD

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=218106 XPE_RS18410 WP_008575092.1 4110584..4111978(-) (pilR) [Xanthomonas perforans 91-118]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCTTGCGCATCAGCACCGCGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGA
CCGACATGCGGTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGCGCCCCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGAGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGATCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGA
CGCATTGAATCACTACGGCTTCCCAGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCCGTCCCCAACGGAGGCGCCGCG
GCCGAACAGCGCGAAGCCGTCGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGC
TGCGTTATAAGTTGAAGAAGCTGGGGATGGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

99.784

0.631
  pilR Acinetobacter baumannii strain A118

49.353

100

0.494

Multiple sequence alignment