Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B1H58_RS08390 Genome accession   NZ_CP019706
Coordinates   1788474..1789994 (-) Length   506 a.a.
NCBI ID   WP_085069417.1    Uniprot ID   A0A1W6B4N2
Organism   Pantoea alhagi strain LTYR-11Z     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1783474..1794994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1H58_RS08380 (B1H58_08430) hdfR 1787122..1787949 (-) 828 WP_085069413.1 HTH-type transcriptional regulator HdfR -
  B1H58_RS08385 (B1H58_08435) - 1788072..1788410 (+) 339 WP_085069415.1 DUF413 domain-containing protein -
  B1H58_RS08390 (B1H58_08440) comM 1788474..1789994 (-) 1521 WP_085069417.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B1H58_RS08395 (B1H58_08445) ilvL 1790333..1790431 (+) 99 WP_071883719.1 ilv operon leader peptide -
  B1H58_RS08400 (B1H58_08450) ilvG 1790581..1792227 (+) 1647 WP_085069419.1 acetolactate synthase 2 catalytic subunit -
  B1H58_RS08405 (B1H58_08455) ilvM 1792224..1792481 (+) 258 WP_085069421.1 acetolactate synthase 2 small subunit -
  B1H58_RS08410 (B1H58_08460) ilvE 1792500..1793429 (+) 930 WP_085069423.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55028.53 Da        Isoelectric Point: 7.8129

>NTDB_id=217977 B1H58_RS08390 WP_085069417.1 1788474..1789994(-) (comM) [Pantoea alhagi strain LTYR-11Z]
MSLSRVITRAALGVEAPLVTVEVHISRGLPGLSLVGLPEKTVKEARDRVRSAIINSGFDFPAKRVTVNLAPADLPKEGGR
FDLPIAVAILAASEQLPDVELAQFEFLGELALSGALRGVQGAIPAAMAAKEAGRRLILPAENAADVGLVQQGESLVAESL
MEICAFLLQQHSLSPGKADEVVNEEKSEDLCDIIGQQQGKRALEIAAAGGHNLLLIGPPGTGKTMLAMRLTGLLPPLTER
EALECAIIASIVKSGDVHKQWRRRPFRLPHHSSTLYALIGGGSIPQPGEITLAHNGVLFLDELPEFNRKTLDALREPLET
GEITISRARARVTWPARFQLVAAMNPSPTGHYQGNHNRSTPQQTLCYLSRLSGPFLDRFDLSLEIPLLPPGMLSQPQKNA
EGSNEVRSRVLEARERQLARQGKVNALMSNAEVQQWCGLQQADAEWLESVLVKLGLSVRAWQRLLKVSRTIADLAGEKKL
SRAHLLEALSYRGMDRMMAHLHKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=217977 B1H58_RS08390 WP_085069417.1 1788474..1789994(-) (comM) [Pantoea alhagi strain LTYR-11Z]
ATGTCTTTATCCCGCGTTATTACACGTGCGGCACTGGGCGTAGAAGCGCCGCTAGTGACGGTGGAAGTTCATATAAGTCG
TGGTTTACCTGGCCTTTCGCTGGTTGGGTTACCTGAAAAAACGGTGAAAGAAGCGCGTGACAGGGTGCGTAGCGCGATTA
TTAATAGCGGCTTTGATTTCCCGGCAAAGCGTGTCACGGTTAATCTGGCTCCTGCTGATTTGCCAAAAGAAGGCGGCCGC
TTTGATCTCCCCATTGCTGTTGCCATTCTTGCCGCTTCAGAGCAACTTCCTGACGTAGAACTGGCTCAGTTTGAATTCCT
GGGAGAGCTGGCGCTTAGCGGTGCGCTCAGAGGCGTACAGGGCGCGATTCCCGCAGCAATGGCCGCCAAAGAAGCGGGCA
GAAGATTAATTTTACCTGCTGAAAATGCTGCCGACGTGGGTTTAGTCCAACAGGGGGAATCACTGGTTGCTGAAAGTCTG
ATGGAGATCTGTGCTTTTCTCTTACAGCAGCACTCTCTCTCACCTGGGAAAGCAGATGAGGTGGTTAACGAAGAGAAAAG
CGAGGACTTGTGCGATATCATCGGTCAACAGCAGGGAAAGCGAGCGCTGGAAATCGCCGCAGCAGGAGGACACAACCTAC
TGCTTATTGGCCCGCCGGGAACAGGAAAAACTATGCTGGCGATGCGGCTAACCGGGCTATTACCTCCCCTTACCGAACGT
GAAGCATTAGAGTGCGCCATTATTGCCAGTATCGTAAAAAGCGGCGATGTGCATAAACAATGGCGCAGGCGACCGTTTCG
GCTTCCCCATCATAGTTCAACGCTCTATGCGCTTATCGGCGGTGGTAGCATTCCGCAGCCCGGCGAAATTACCCTGGCAC
ATAACGGAGTACTGTTTCTGGATGAACTTCCTGAATTCAATCGGAAAACGCTCGATGCGTTACGTGAGCCGTTAGAAACC
GGTGAAATTACCATTTCGCGTGCACGGGCCAGGGTAACCTGGCCTGCACGCTTTCAACTGGTTGCCGCAATGAATCCCAG
CCCAACCGGACATTATCAGGGTAATCATAATCGCAGCACGCCACAGCAAACGCTGTGTTATCTCAGCCGCTTATCAGGCC
CCTTTCTCGATCGTTTCGACCTTTCTCTGGAGATACCGCTGTTGCCGCCAGGAATGTTAAGCCAGCCGCAAAAAAACGCC
GAGGGCAGTAATGAGGTCCGGTCACGGGTGCTGGAAGCGCGTGAACGTCAGCTGGCGCGCCAGGGGAAAGTGAATGCGTT
AATGAGTAATGCAGAAGTACAGCAATGGTGTGGGTTGCAACAAGCCGATGCAGAATGGCTTGAATCAGTATTGGTTAAAC
TGGGGCTTTCTGTCAGAGCCTGGCAACGCTTGTTAAAGGTCTCACGTACCATCGCTGATTTAGCAGGGGAAAAAAAGCTT
AGTCGTGCACATCTGTTGGAAGCTTTAAGCTATCGCGGCATGGATCGTATGATGGCGCATTTGCATAAAAGCCTGGAATA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6B4N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.433

100

0.607
  comM Vibrio cholerae strain A1552

61.155

99.209

0.607
  comM Glaesserella parasuis strain SC1401

60.158

100

0.603
  comM Vibrio campbellii strain DS40M4

59.604

99.802

0.595
  comM Legionella pneumophila str. Paris

50.602

98.419

0.498
  comM Legionella pneumophila strain ERS1305867

50.602

98.419

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.685

100

0.449

Multiple sequence alignment