Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LIN_RS00190 Genome accession   NC_003212
Coordinates   42038..42577 (+) Length   179 a.a.
NCBI ID   WP_003759533.1    Uniprot ID   A0A6B0JGK2
Organism   Listeria innocua Clip11262     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 37038..47577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN_RS00170 (lin0034) - 38157..39242 (+) 1086 WP_010990167.1 glutamine--fructose-6-phosphate aminotransferase -
  LIN_RS00175 (lin0035) - 39445..40104 (+) 660 WP_010990168.1 DedA family protein -
  LIN_RS00180 (lin0036) arcA 40177..41409 (+) 1233 WP_077904844.1 arginine deiminase -
  LIN_RS00185 (lin0037) rpsF 41689..41982 (+) 294 WP_003718123.1 30S ribosomal protein S6 -
  LIN_RS00190 (lin0038) ssbA 42038..42577 (+) 540 WP_003759533.1 single-stranded DNA-binding protein Machinery gene
  LIN_RS00195 (lin0039) rpsR 42621..42860 (+) 240 WP_003721669.1 30S ribosomal protein S18 -
  LIN_RS00200 (lin0040) - 43016..43627 (+) 612 WP_003759535.1 PepSY domain-containing protein -
  LIN_RS00205 (lin0041) - 43883..44497 (+) 615 WP_003764750.1 accessory gene regulator ArgB-like protein -
  LIN_RS00210 (lin0042) - 44481..44642 (+) 162 WP_003721672.1 cyclic lactone autoinducer peptide -
  LIN_RS00215 (lin0043) - 44738..46033 (+) 1296 WP_010990170.1 sensor histidine kinase -
  LIN_RS00220 (lin0044) - 46052..46780 (+) 729 WP_003759538.1 LytR/AlgR family response regulator transcription factor -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19604.25 Da        Isoelectric Point: 4.7306

>NTDB_id=21787 LIN_RS00190 WP_003759533.1 42038..42577(+) (ssbA) [Listeria innocua Clip11262]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNNYQGGNNNNNYNNGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNN
DPFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=21787 LIN_RS00190 WP_003759533.1 42038..42577(+) (ssbA) [Listeria innocua Clip11262]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAGGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCCGTTGC
GACTTTTACCTTAGCTGTAAATCGTACGTTCACTAACCAACAGGGAGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCAGGCGTTGATGGCCGGGTTCAAACTCGT
AATTACGAGGGAAACGATGGCAAACGTGTTTATGTGACAGAAATTGTAGCTGAGAGTGTTCAATTCCTTGAACCGCGCAA
TTCTAATGGCGGTGGCGGAAATAATAACTATCAAGGCGGAAATAACAACAATAATTATAATAACGGTGGAAATAACTTCG
GACAAGCACCTACTAATAACGGTGGATTCGGACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAACAAT
GATCCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B0JGK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.039

100

0.67
  ssb Latilactobacillus sakei subsp. sakei 23K

54.645

100

0.559
  ssb Vibrio cholerae strain A1552

33.673

100

0.369
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

59.218

0.363
  ssb Glaesserella parasuis strain SC1401

34.946

100

0.363

Multiple sequence alignment