NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	CXG95_RS05520	Genome accession	NZ_CP025226
Coordinates	1065483..1066157 (+)	Length	224 a.a.
NCBI ID	WP_003184045.1	Uniprot ID	Q65GL3
Organism	Bacillus licheniformis strain PB3
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1060483..1071157

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXG95_RS05500 (CXG95_05490)	-	1061277..1062575 (+)	1299	WP_009329287.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
CXG95_RS05505 (CXG95_05495)	comC	1062718..1063467 (+)	750	WP_003184052.1	A24 family peptidase	Machinery gene
CXG95_RS05510 (CXG95_05500)	-	1063671..1064702 (+)	1032	WP_003184050.1	SPOR domain-containing protein	-
CXG95_RS05515 (CXG95_05505)	-	1064856..1065428 (+)	573	WP_003184048.1	Maf family protein	-
CXG95_RS05520 (CXG95_05510)	ysxA/radC	1065483..1066157 (+)	675	WP_003184045.1	DNA repair protein RadC	Machinery gene
CXG95_RS05525 (CXG95_05515)	-	1066245..1067255 (+)	1011	WP_003184042.1	rod shape-determining protein	-
CXG95_RS05530 (CXG95_05520)	mreC	1067286..1068194 (+)	909	WP_003184040.1	rod shape-determining protein MreC	-
CXG95_RS05535 (CXG95_05525)	mreD	1068191..1068709 (+)	519	WP_003184039.1	rod shape-determining protein MreD	-
CXG95_RS05540 (CXG95_05530)	minC	1068764..1069444 (+)	681	WP_011198163.1	septum site-determining protein MinC	-
CXG95_RS05545 (CXG95_05535)	minD	1069447..1070253 (+)	807	WP_003184035.1	septum site-determining protein MinD	-
CXG95_RS05550 (CXG95_05540)	-	1070298..1070618 (-)	321	WP_003184034.1	metalloregulator ArsR/SmtB family transcription factor	-
CXG95_RS05555 (CXG95_05545)	-	1070618..1071046 (-)	429	WP_003184032.1	SRPBCC domain-containing protein	-

Sequence

Protein

Download Length: 224 a.a. Molecular weight: 25239.11 Da Isoelectric Point: 8.3107

                                >NTDB_id=217658 CXG95_RS05520 WP_003184045.1 1065483..1066157(+) (ysxA/radC) [Bacillus licheniformis strain PB3]

MKLKDFPDEERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLLKEASAEELSSISGIGRAKAV

QILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFLSQEHFVCVYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKE

ALKRSAASFICVHNHPSGDPAPSREDIEVTQRLHESGQLLGIELLDHIIIGDQKFVSLKEKGYL

Nucleotide

Download Length: 675 bp

                                >NTDB_id=217658 CXG95_RS05520 WP_003184045.1 1065483..1066157(+) (ysxA/radC) [Bacillus licheniformis strain PB3]

TTGAAATTAAAAGATTTTCCTGATGAAGAAAGGCCAAGGGAGCGCCTTCTCAACACAGGCGCCGAAAGTTTGTCAAACCA

TGAACTGCTTGCGATACTGCTCAGAACCGGTACGAAAAAAGAATCGGTTCTTCAGCTTTCAAGCCGGCTGCTTCAAACGT

TTGACGGCCTCCGTTTGTTAAAAGAAGCATCCGCCGAGGAGCTTTCAAGCATTTCCGGGATCGGCCGCGCAAAAGCCGTG

CAGATTTTGGCGGCCCTTGAGCTTGGCCGGCGCATTCACAGTCTGGCTTGCAAAGACCGTTATGTGATTCGTTTTCCCGA

AGATGCGGCCAATTTTTTAATGGGGGATATGCGCTTTCTCTCTCAGGAGCACTTCGTATGTGTGTATCTGAACACGAAAA

ACCAGGTGATCCACAAGCGCACGGTTTTTATAGGGAGCCTGAACTCTTCAATCGTCCATCCGAGGGAAGTGTTTAAAGAA

GCTTTAAAGCGCTCCGCAGCTTCATTCATCTGCGTCCACAATCATCCGTCCGGAGATCCGGCTCCAAGCCGCGAAGACAT

AGAAGTTACACAGCGCCTTCACGAGTCCGGACAGCTGCTCGGAATCGAATTGCTCGATCATATCATCATCGGTGATCAAA

AATTTGTGAGCTTAAAAGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q65GL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	80.804	100	0.808
radC	Streptococcus pneumoniae TIGR4	46.667	93.75	0.438
radC	Streptococcus pneumoniae R6	46.19	93.75	0.433
radC	Streptococcus pneumoniae D39	46.19	93.75	0.433
radC	Streptococcus gordonii str. Challis substr. CH1	44.762	93.75	0.42

Detailed information NTG0217658