Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   CXG95_RS05505 Genome accession   NZ_CP025226
Coordinates   1062718..1063467 (+) Length   249 a.a.
NCBI ID   WP_003184052.1    Uniprot ID   -
Organism   Bacillus licheniformis strain PB3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1057718..1068467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXG95_RS05490 (CXG95_05480) - 1057900..1058091 (-) 192 WP_003184058.1 hypothetical protein -
  CXG95_RS05495 (CXG95_05485) - 1058553..1061195 (+) 2643 WP_003184055.1 valine--tRNA ligase -
  CXG95_RS05500 (CXG95_05490) - 1061277..1062575 (+) 1299 WP_009329287.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  CXG95_RS05505 (CXG95_05495) comC 1062718..1063467 (+) 750 WP_003184052.1 A24 family peptidase Machinery gene
  CXG95_RS05510 (CXG95_05500) - 1063671..1064702 (+) 1032 WP_003184050.1 SPOR domain-containing protein -
  CXG95_RS05515 (CXG95_05505) - 1064856..1065428 (+) 573 WP_003184048.1 Maf family protein -
  CXG95_RS05520 (CXG95_05510) ysxA/radC 1065483..1066157 (+) 675 WP_003184045.1 DNA repair protein RadC Machinery gene
  CXG95_RS05525 (CXG95_05515) - 1066245..1067255 (+) 1011 WP_003184042.1 rod shape-determining protein -
  CXG95_RS05530 (CXG95_05520) mreC 1067286..1068194 (+) 909 WP_003184040.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26944.49 Da        Isoelectric Point: 8.7373

>NTDB_id=217657 CXG95_RS05505 WP_003184052.1 1062718..1063467(+) (comC) [Bacillus licheniformis strain PB3]
MFIFYLFTAGLVLGSFFNSAGRRISEKISLIAPRSLCRVCKRQLGFSELIPVLSYLMQRGRCKGCQTPLSIVYPAVELSA
AILFAFAGMHVGHEGELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGGMLPLL
TLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIALLAGKLKKNEPMPFAPAILAGTLTSCFYGEPMI
EWYLQTAWW

Nucleotide


Download         Length: 750 bp        

>NTDB_id=217657 CXG95_RS05505 WP_003184052.1 1062718..1063467(+) (comC) [Bacillus licheniformis strain PB3]
ATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTTTAATTCGGCCGGGCGCCGCATTTCTGAAAA
GATATCATTGATTGCTCCGCGTTCCCTCTGCCGCGTCTGCAAAAGGCAGCTGGGCTTCTCGGAGCTGATACCGGTTTTGT
CCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAACCCCGCTCTCGATCGTGTATCCGGCAGTTGAGCTCTCCGCC
GCCATCCTGTTTGCGTTTGCCGGCATGCACGTTGGGCATGAGGGGGAGCTGGTGATTGTGCTTGCTCTTATATCTCTGCT
TTTGATCGTCTTTGTATCTGATGTGACACACATGATCATTCCGGATGCTGTTCTTTGTTTTTTCCTGCCTGTCTTTGCCG
TCGGACGATTCCTTGTTCCTCTGGAACAGTGGCACTCAAGTTTGAGCGGTGCGATGGCCGGCGGTATGCTGCCCCTCTTG
ACGCTGCTTTTGACGAAAGGGGGGATCGGCTGGGGAGACGTAAAGCTGTTTGCGGTAATCGGCATGGCGCTCGGCAGCCG
CCTCCTCGTTCTCGCTTTTTTCCTCTCGGCAGCCGCAGGAACGGTGCTTGGTCTTATTGCACTCCTGGCAGGCAAACTGA
AGAAAAATGAACCAATGCCGTTTGCTCCCGCGATTCTGGCCGGGACGCTGACGAGCTGCTTCTATGGCGAACCAATGATC
GAGTGGTACCTTCAAACGGCATGGTGGTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(102-205)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

47.934

97.189

0.466