Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Mag101_RS14510 Genome accession   NZ_CP019650
Coordinates   3460592..3461176 (-) Length   194 a.a.
NCBI ID   WP_077406555.1    Uniprot ID   A0A1Q2M861
Organism   Microbulbifer agarilyticus strain GP101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3455592..3466176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Mag101_RS14490 (Mag101_14555) galU 3456637..3457473 (-) 837 WP_077406545.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  Mag101_RS14495 (Mag101_14560) fabA 3457803..3458327 (+) 525 WP_010132163.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  Mag101_RS14500 (Mag101_14565) fabB 3458404..3459627 (+) 1224 WP_077406548.1 beta-ketoacyl-ACP synthase I -
  Mag101_RS14505 (Mag101_14570) - 3459727..3460575 (-) 849 WP_077406551.1 sugar nucleotide-binding protein -
  Mag101_RS14510 (Mag101_14575) ssb 3460592..3461176 (-) 585 WP_077406555.1 single-stranded DNA-binding protein Machinery gene
  Mag101_RS14515 (Mag101_14580) - 3461389..3462561 (-) 1173 WP_077406558.1 MFS transporter -
  Mag101_RS14520 (Mag101_14585) uvrA 3462755..3465580 (+) 2826 WP_077406561.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21229.04 Da        Isoelectric Point: 5.0100

>NTDB_id=217575 Mag101_RS14510 WP_077406555.1 3460592..3461176(-) (ssb) [Microbulbifer agarilyticus strain GP101]
MASRGVNKVILVGNLGGDPETRYMPSGGAVTNVTVATSETWKDKQSGQQQERTEWHRVVFFNRLAEIAGEYLRKGSKVYL
EGSLRTRKWQDKNSGQDRYTTEIVASEMQMLDSRGEGGYQQQGQGGGFQQQNQGGGFQQDQSGYQDEFAQGRSAPSPMAP
SNQQQGGGQPQNRPAGNQPPAGGFDNSFDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=217575 Mag101_RS14510 WP_077406555.1 3460592..3461176(-) (ssb) [Microbulbifer agarilyticus strain GP101]
ATGGCTTCCAGAGGCGTGAACAAAGTAATCCTGGTGGGCAACCTGGGCGGTGACCCCGAGACCCGTTACATGCCGAGCGG
TGGTGCCGTAACCAACGTGACCGTAGCGACTTCCGAGACCTGGAAGGACAAGCAGAGCGGTCAGCAGCAGGAACGTACCG
AATGGCACCGTGTGGTGTTTTTCAATCGCCTCGCTGAAATTGCCGGTGAATACCTGCGCAAAGGCAGCAAGGTATACCTG
GAAGGTTCCCTGCGTACCCGCAAGTGGCAGGACAAGAACTCCGGCCAGGACCGTTACACTACCGAAATCGTTGCCAGCGA
AATGCAGATGCTGGATAGCCGTGGCGAAGGTGGCTACCAGCAGCAGGGCCAGGGTGGTGGCTTCCAGCAGCAAAACCAGG
GCGGTGGTTTCCAGCAGGATCAGAGTGGCTACCAGGACGAATTCGCCCAGGGCCGCTCTGCGCCTTCACCGATGGCGCCG
TCCAACCAGCAGCAGGGTGGCGGCCAGCCGCAGAATCGCCCCGCGGGTAACCAGCCTCCCGCCGGTGGCTTTGATAACAG
CTTCGACGACGACATTCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q2M861

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.774

100

0.562
  ssb Glaesserella parasuis strain SC1401

54.124

100

0.541
  ssb Neisseria gonorrhoeae MS11

47.09

97.423

0.459
  ssb Neisseria meningitidis MC58

46.561

97.423

0.454

Multiple sequence alignment