Detailed information NTG0217508

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ADP71_RS09490
• Genome accession: NZ_CP019644
• Coordinates: 1922596..1923480 (-)
• Length: 294 a.a.
• NCBI ID: WP_019957101.1
• Uniprot ID: A0A2L0PNS6
• Organism: Vitreoscilla sp. C1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1917596..1928480

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ADP71_RS09465 (ADP71_25290)	-	1917717..1918001 (+)	285	WP_019957106.1	helix-turn-helix domain-containing protein	-
ADP71_RS09470 (ADP71_25300)	-	1918091..1920907 (-)	2817	WP_171461109.1	valine--tRNA ligase	-
ADP71_RS09475 (ADP71_25320)	yacG	1921024..1921212 (-)	189	WP_104932064.1	DNA gyrase inhibitor YacG	-
ADP71_RS09480 (ADP71_25330)	zapD	1921200..1921988 (-)	789	WP_019957103.1	cell division protein ZapD	-
ADP71_RS09485 (ADP71_25340)	coaE	1921997..1922599 (-)	603	WP_019957102.1	dephospho-CoA kinase	-
ADP71_RS09490 (ADP71_25350)	pilD	1922596..1923480 (-)	885	WP_019957101.1	A24 family peptidase	Machinery gene
ADP71_RS09495 (ADP71_25360)	pilG	1923483..1924712 (-)	1230	WP_171461110.1	type II secretion system F family protein	Machinery gene
ADP71_RS09500 (ADP71_25370)	pilF	1924745..1926436 (-)	1692	WP_019957099.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ADP71_RS09505 (ADP71_25390)	-	1926571..1927611 (-)	1041	WP_104932065.1	porin	-
ADP71_RS09510 (ADP71_25400)	-	1928069..1928389 (+)	321	WP_171461111.1	helix-hairpin-helix domain-containing protein	-

Sequence

Protein

• Length: 294 a.a.
• Molecular weight: 32678.28 Da
• Isoelectric Point: 7.9542

>NTDB_id=217508 ADP71_RS09490 WP_019957101.1 1922596..1923480(-) (pilD) [Vitreoscilla sp. C1]
MMNNLSLEFWLPVCLVLGLLVGSFLNVVIYRVPEGLNRSWRTQAKQMLDMPLEPIDEERFNIMTPPSHCPKCKSPVKPWQ
NIPIVSYILLKGQCKHCDQPISKRYPLVELLTGLVFAVCAWKFGVTWTAVGAMLLSAYLIAMIFIDADTQLLPDQLTLPL
MWAGIVFHLLAEVLQGAWGITTLVDSVMGAVVGYMSLWTIFQLFKLVTGKEGMGYGDFKLLAALGAWIGVGMLPIVIVMS
SLVGLIFAVIMNVAKSQPMPFGPYLAISGWLVLIFSHPITQFIQWWLAKSGFVA

Nucleotide

• Length: 885 bp

>NTDB_id=217508 ADP71_RS09490 WP_019957101.1 1922596..1923480(-) (pilD) [Vitreoscilla sp. C1]
ATGATGAATAATTTATCATTAGAGTTTTGGTTGCCTGTTTGCTTGGTATTGGGTTTGCTGGTTGGCAGTTTTTTGAACGT
GGTGATTTATCGTGTGCCTGAGGGCTTAAATCGCTCTTGGCGCACACAGGCCAAGCAAATGTTGGACATGCCTTTAGAAC
CTATCGATGAGGAGCGTTTCAATATCATGACGCCGCCTTCTCATTGCCCTAAATGCAAAAGCCCTGTAAAGCCTTGGCAA
AATATTCCGATTGTCAGTTACATTTTGCTCAAAGGGCAATGCAAACACTGTGACCAACCTATTTCCAAGCGTTATCCTTT
GGTAGAGTTATTAACGGGCTTGGTATTTGCGGTTTGTGCATGGAAGTTTGGTGTCACATGGACGGCAGTTGGTGCAATGT
TGTTGAGCGCTTATTTGATTGCGATGATTTTCATTGATGCTGACACGCAATTATTGCCTGATCAATTGACTTTGCCTTTG
ATGTGGGCAGGTATCGTGTTTCATTTGTTGGCTGAAGTTTTACAGGGCGCTTGGGGTATCACGACATTGGTAGACTCTGT
AATGGGCGCTGTGGTGGGTTATATGTCGTTGTGGACCATCTTCCAGTTGTTTAAATTGGTCACAGGCAAAGAAGGCATGG
GTTATGGGGATTTCAAGTTACTGGCCGCTTTGGGTGCTTGGATAGGCGTGGGCATGTTGCCGATTGTGATTGTGATGTCA
TCGTTGGTCGGTTTGATTTTTGCGGTCATTATGAATGTCGCGAAAAGCCAGCCTATGCCTTTTGGTCCATATCTGGCGAT
TTCAGGTTGGTTGGTATTGATATTTAGCCATCCCATCACACAATTTATCCAATGGTGGTTAGCCAAATCAGGATTTGTCG
CATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (16-123)

• Type IV leader peptidase family (Peptidase_A24) (133-248)

3D structure

• AlphaFold DB: A0A2L0PNS6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	50.69	98.639	0.5
pilD	Vibrio cholerae strain A1552	48.561	94.558	0.459
pilD	Vibrio campbellii strain DS40M4	46.975	95.578	0.449
pilD	Acinetobacter nosocomialis M2	45.07	96.599	0.435
pilD	Acinetobacter baumannii D1279779	45.926	91.837	0.422