Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilG   Type   Machinery gene
Locus tag   ADP71_RS09495 Genome accession   NZ_CP019644
Coordinates   1923483..1924712 (-) Length   409 a.a.
NCBI ID   WP_171461110.1    Uniprot ID   A0A2L0PNW3
Organism   Vitreoscilla sp. C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1918483..1929712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADP71_RS09475 (ADP71_25320) yacG 1921024..1921212 (-) 189 WP_104932064.1 DNA gyrase inhibitor YacG -
  ADP71_RS09480 (ADP71_25330) zapD 1921200..1921988 (-) 789 WP_019957103.1 cell division protein ZapD -
  ADP71_RS09485 (ADP71_25340) coaE 1921997..1922599 (-) 603 WP_019957102.1 dephospho-CoA kinase -
  ADP71_RS09490 (ADP71_25350) pilD 1922596..1923480 (-) 885 WP_019957101.1 A24 family peptidase Machinery gene
  ADP71_RS09495 (ADP71_25360) pilG 1923483..1924712 (-) 1230 WP_171461110.1 type II secretion system F family protein Machinery gene
  ADP71_RS09500 (ADP71_25370) pilF 1924745..1926436 (-) 1692 WP_019957099.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ADP71_RS09505 (ADP71_25390) - 1926571..1927611 (-) 1041 WP_104932065.1 porin -
  ADP71_RS09510 (ADP71_25400) - 1928069..1928389 (+) 321 WP_171461111.1 helix-hairpin-helix domain-containing protein -

Sequence


Protein


Download         Length: 409 a.a.        Molecular weight: 45091.06 Da        Isoelectric Point: 9.0906

>NTDB_id=217509 ADP71_RS09495 WP_171461110.1 1923483..1924712(-) (pilG) [Vitreoscilla sp. C1]
MATAKKETVKKEKGTRFSFEGKSRASQQVMRGEVIAKNEKDAQEKLARRGIQVVHLRKMKTAKRSKIKHSDVTLFARQLA
TMMKAGLPLLQAFEIVAKGHSNANMTDLLMEVRSDIEQGTALAAAFGKHPKYFDKLFCSLVDAGEAGGVLDSLLDKLATY
MEKTEAIKRRVKGALMYPTAVVIVAVGLIVLMMLFVLPSFGKIYSGLGAELPHLTQIVMNVSDFFVANWWWMLLLTIAAF
IAWKVAFNKFFAVQKAVDKLMLNMPIFGEIVKKAAIARWARTTATLFAAGVPLVEALESVAGAAGNIWYEEGTFQIRSKV
QQGTSLTSAMQETDLFPNMILQMAAIGEESDSIDDMLNKAAEFYEDEVDQAVDTLSSLMEPIIMVVLGSIVGFLLIAMYL
PLFSMGDAF

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=217509 ADP71_RS09495 WP_171461110.1 1923483..1924712(-) (pilG) [Vitreoscilla sp. C1]
ATGGCAACAGCTAAAAAAGAAACGGTCAAAAAAGAAAAAGGCACACGTTTTTCTTTTGAGGGCAAAAGTAGAGCTAGTCA
GCAAGTCATGCGTGGTGAAGTGATTGCGAAAAATGAAAAAGATGCGCAGGAGAAACTTGCTCGACGTGGTATTCAAGTCG
TTCATTTACGTAAAATGAAGACGGCCAAACGCAGTAAAATCAAACATTCTGATGTGACACTGTTCGCCCGTCAATTGGCT
ACCATGATGAAAGCAGGGTTACCTTTGTTACAAGCATTTGAAATTGTGGCTAAAGGGCATTCGAATGCGAACATGACAGA
CTTGTTGATGGAAGTTCGATCTGATATTGAGCAAGGTACGGCACTGGCCGCTGCATTTGGTAAACATCCCAAGTATTTTG
ATAAATTGTTTTGTAGTTTGGTAGATGCAGGTGAAGCCGGCGGTGTATTGGATTCATTGTTAGACAAACTGGCTACTTAT
ATGGAAAAAACCGAAGCCATTAAGCGTCGTGTTAAGGGCGCTTTGATGTACCCAACCGCCGTTGTTATTGTGGCAGTAGG
CTTAATTGTTTTAATGATGTTATTTGTATTGCCTTCGTTTGGTAAAATTTATTCAGGTCTGGGGGCTGAACTACCGCATT
TAACTCAAATTGTTATGAATGTGTCGGATTTCTTTGTTGCTAACTGGTGGTGGATGTTGCTTTTGACGATTGCGGCATTT
ATTGCATGGAAAGTAGCATTTAATAAGTTTTTTGCAGTTCAAAAAGCTGTGGATAAACTGATGTTGAACATGCCGATTTT
TGGTGAGATTGTTAAAAAAGCTGCGATTGCACGTTGGGCACGTACGACTGCGACATTGTTTGCAGCTGGTGTACCTTTGG
TAGAGGCTTTAGAGTCGGTTGCAGGTGCGGCGGGTAATATTTGGTATGAAGAAGGCACATTCCAAATTCGCTCTAAAGTT
CAGCAAGGTACGTCTTTGACATCAGCGATGCAAGAAACCGATTTATTTCCCAATATGATTTTGCAAATGGCTGCTATTGG
TGAAGAGTCAGATTCGATTGACGATATGCTTAATAAGGCTGCTGAATTTTATGAAGATGAAGTCGACCAAGCGGTAGATA
CCTTATCTAGCTTGATGGAACCTATTATTATGGTGGTCTTGGGTAGTATTGTTGGCTTCTTATTGATTGCCATGTACTTG
CCATTGTTCAGTATGGGTGATGCATTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2L0PNW3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

58.603

98.044

0.575

  pilG Neisseria meningitidis 44/76-A

58.105

98.044

0.57

  pilC Legionella pneumophila strain ERS1305867

47.98

96.822

0.465

  pilC Pseudomonas stutzeri DSM 10701

45.729

97.311

0.445

  pilC Acinetobacter baylyi ADP1

44.949

96.822

0.435

  pilC Acinetobacter baumannii D1279779

44.81

96.577

0.433


Multiple sequence alignment