Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CXB69_RS08400 Genome accession   NZ_CP025206
Coordinates   1700327..1700959 (+) Length   210 a.a.
NCBI ID   WP_016265428.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0074     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1695327..1705959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB69_RS08375 (CXB69_08365) mltG 1695623..1696774 (+) 1152 WP_016265432.1 endolytic transglycosylase MltG -
  CXB69_RS08380 (CXB69_08370) udk 1696853..1697488 (+) 636 WP_025016019.1 uridine kinase -
  CXB69_RS08385 (CXB69_08375) greA 1697510..1697983 (+) 474 WP_011375067.1 transcription elongation factor GreA -
  CXB69_RS08390 (CXB69_08380) liaF 1698506..1699264 (+) 759 WP_016265430.1 cell wall-active antibiotics response protein LiaF -
  CXB69_RS08395 (CXB69_08385) - 1699261..1700325 (+) 1065 WP_016265429.1 sensor histidine kinase -
  CXB69_RS08400 (CXB69_08390) vraR 1700327..1700959 (+) 633 WP_016265428.1 response regulator Regulator
  CXB69_RS08405 (CXB69_08395) - 1700985..1701278 (+) 294 WP_011375063.1 HesB/YadR/YfhF family protein -
  CXB69_RS08410 (CXB69_08400) - 1701404..1702471 (+) 1068 WP_234057514.1 ABC transporter permease -
  CXB69_RS08415 (CXB69_08405) - 1702473..1703138 (+) 666 WP_016265426.1 ABC transporter ATP-binding protein -
  CXB69_RS08420 (CXB69_08410) - 1703213..1703431 (+) 219 WP_016265425.1 CsbD family protein -
  CXB69_RS08425 (CXB69_08415) - 1703486..1704481 (-) 996 WP_016265424.1 YhdH/YhfP family quinone oxidoreductase -
  CXB69_RS08430 (CXB69_08420) - 1704637..1705728 (+) 1092 WP_011375058.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23359.95 Da        Isoelectric Point: 4.7642

>NTDB_id=217509 CXB69_RS08400 WP_016265428.1 1700327..1700959(+) (vraR) [Latilactobacillus sakei strain WiKim0074]
MIKVLIVDDHEMVRLGISTYLGVQDDLEVVDQAVNGREGVEKALALRPDAILMDLVMPEMDGIEATKTILKAWPQAKIII
LTSFIDDEKVYPAIEAGAASYILKTSTAEEIANTIRKTTAGQSVLEPEVTNKMMNRMTHQAETKLYEDLTNREREVLGLI
AKGRSNQEIADELFITLKTVKTHVSNILAKLQVDDRTQAAIYAIKHQLAD

Nucleotide


Download         Length: 633 bp        

>NTDB_id=217509 CXB69_RS08400 WP_016265428.1 1700327..1700959(+) (vraR) [Latilactobacillus sakei strain WiKim0074]
GTGATAAAAGTATTGATTGTAGATGACCACGAGATGGTTCGATTGGGGATTTCAACTTATTTAGGGGTGCAAGACGATTT
AGAAGTGGTCGATCAAGCGGTTAATGGTCGTGAAGGTGTCGAAAAGGCATTGGCACTACGGCCAGATGCGATTTTAATGG
ATCTCGTCATGCCTGAAATGGATGGGATTGAAGCCACTAAGACGATTCTAAAGGCTTGGCCTCAAGCCAAGATTATTATT
CTAACCAGCTTTATTGATGATGAAAAAGTCTACCCAGCAATCGAAGCTGGTGCAGCAAGTTACATATTAAAAACGTCGAC
GGCCGAAGAGATTGCCAACACGATTCGGAAGACAACTGCGGGGCAATCAGTTTTAGAACCTGAAGTCACTAATAAGATGA
TGAATCGTATGACGCATCAGGCAGAAACAAAGTTATACGAAGATTTAACGAACCGTGAACGAGAAGTCCTAGGTTTGATT
GCCAAGGGTCGCAGTAATCAAGAAATTGCGGATGAATTATTCATTACACTTAAAACGGTTAAGACGCATGTTTCCAATAT
TTTAGCGAAGTTACAAGTCGACGATCGGACGCAGGCCGCAATTTATGCCATCAAGCACCAATTAGCGGATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

62.319

98.571

0.614
  degU Bacillus subtilis subsp. subtilis str. 168

36.53

100

0.381

Multiple sequence alignment