Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ADP71_RS00605 Genome accession   NZ_CP019644
Coordinates   116509..118023 (+) Length   504 a.a.
NCBI ID   WP_019958294.1    Uniprot ID   -
Organism   Vitreoscilla sp. C1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 111509..123023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADP71_RS00570 (ADP71_01370) - 112296..112838 (+) 543 WP_019958287.1 hypothetical protein -
  ADP71_RS00575 (ADP71_01380) recO 113018..113785 (+) 768 WP_040755743.1 DNA repair protein RecO -
  ADP71_RS00580 (ADP71_01390) pdxJ 113794..114537 (+) 744 WP_019958289.1 pyridoxine 5'-phosphate synthase -
  ADP71_RS00585 (ADP71_01400) acpS 114546..114923 (+) 378 WP_026353545.1 holo-ACP synthase -
  ADP71_RS00590 (ADP71_01410) - 114920..115681 (+) 762 WP_019958291.1 NUDIX domain-containing protein -
  ADP71_RS00595 (ADP71_01420) - 115678..116109 (+) 432 WP_019958292.1 hypothetical protein -
  ADP71_RS00600 (ADP71_01430) - 116176..116496 (+) 321 WP_019958293.1 accessory factor UbiK family protein -
  ADP71_RS00605 (ADP71_01440) comM 116509..118023 (+) 1515 WP_019958294.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ADP71_RS00610 (ADP71_01450) - 118088..118906 (+) 819 WP_081619558.1 SPOR domain-containing protein -
  ADP71_RS00615 (ADP71_01460) - 118947..119630 (+) 684 WP_019958296.1 thiol:disulfide interchange protein DsbA/DsbL -
  ADP71_RS00620 (ADP71_01470) - 119713..120525 (+) 813 WP_019958297.1 undecaprenyl-diphosphate phosphatase -
  ADP71_RS00625 (ADP71_01480) - 120656..121816 (+) 1161 WP_019958298.1 ATP phosphoribosyltransferase regulatory subunit -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54345.88 Da        Isoelectric Point: 8.7229

>NTDB_id=217494 ADP71_RS00605 WP_019958294.1 116509..118023(+) (comM) [Vitreoscilla sp. C1]
MSLAMVYSRALTGMNAPLVEVEAHLANGLPAFNLVGLPDTEVKESRERVRAAIVQSGFEFPTKKITVNLAPADLPKDSGR
FDLPIAIAILLASGQIKPQQTDILQFEFAGELALSGRLRPIRGALAMAVACASHQRAFVLPSVSAEQAALLPDATVYAAE
SLSQVAAQLNGLQPWQIAQYDGVAQTPEALLDLVDVKGQHSARFALEVAAAGGHHLLMLGPPGTGKSMLAQRLPSILPPL
NTQERLSLASIRSLLMQKTADVLPAHRPFIAPHHSASLASLVGGGSDPKPGAVSLAHHGILFLDELPEFDRKVLESLREP
LEQGEIHISRAKSHVVFPAQFQLVAAMNPCPCGFSGHPSKPCRCSVESIQRYRGKISGPLLDRMDIIIEVPALGHDDLIL
KSIPESSAAVKMRVHDAYILQQQRQGKSNAALGVAQLQSLAKIENDAQAYLSKIINDLGLSVRVFHRLLRLARTCADLQR
NDTVKVQHIIQAIQLRRAGSNRFS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=217494 ADP71_RS00605 WP_019958294.1 116509..118023(+) (comM) [Vitreoscilla sp. C1]
ATGTCGTTGGCAATGGTGTATTCGAGGGCTTTGACTGGAATGAACGCACCTTTGGTGGAGGTAGAAGCCCACTTAGCCAA
CGGCTTGCCTGCTTTTAATTTGGTTGGCTTGCCAGACACGGAAGTCAAAGAAAGTCGTGAGCGCGTTCGTGCTGCGATTG
TACAATCAGGATTTGAATTTCCTACCAAAAAAATCACGGTCAATTTGGCACCTGCTGATTTGCCCAAAGATTCAGGTCGC
TTTGATTTGCCGATTGCGATTGCCATTTTGTTGGCATCAGGTCAAATCAAACCACAACAAACAGACATTTTACAATTTGA
ATTTGCTGGAGAATTGGCGCTTTCAGGACGCTTGCGACCGATTCGAGGCGCTTTGGCGATGGCTGTGGCTTGTGCTAGCC
ACCAACGAGCATTTGTTTTGCCTAGTGTGAGTGCAGAGCAAGCGGCATTGTTGCCTGATGCGACGGTGTATGCTGCCGAA
AGCTTGAGCCAAGTGGCAGCGCAATTGAATGGTTTGCAGCCGTGGCAAATAGCGCAATATGATGGTGTGGCGCAAACGCC
CGAAGCATTGTTGGATTTGGTCGATGTTAAGGGTCAGCACAGCGCACGTTTTGCATTGGAAGTGGCTGCGGCTGGTGGGC
ATCATTTATTGATGTTAGGGCCGCCAGGCACAGGGAAATCCATGTTGGCGCAGCGTTTGCCCAGTATTTTACCCCCTTTG
AATACGCAAGAGCGTTTGAGTTTGGCCAGTATTCGTTCTTTATTGATGCAGAAAACAGCCGATGTTTTGCCTGCGCATCG
TCCTTTTATTGCACCACATCACTCTGCTTCATTGGCTTCATTGGTCGGTGGTGGCTCAGACCCTAAGCCTGGCGCGGTTT
CTTTGGCGCATCACGGCATTTTGTTTTTGGATGAGTTGCCAGAGTTTGACCGAAAAGTATTGGAATCTTTGCGTGAGCCA
TTAGAGCAAGGTGAAATTCACATTTCTAGAGCCAAAAGCCATGTGGTATTTCCTGCACAATTTCAATTGGTCGCAGCGAT
GAATCCTTGTCCTTGTGGTTTTTCAGGACACCCCAGTAAGCCATGCCGTTGTTCTGTGGAAAGCATACAACGCTATCGAG
GGAAAATTTCAGGACCTTTGTTAGATCGCATGGATATTATTATTGAAGTACCTGCTTTGGGGCATGATGATTTGATATTG
AAAAGCATACCTGAAAGCAGTGCGGCTGTTAAAATGCGTGTACATGACGCTTACATTTTACAACAGCAGCGACAAGGTAA
GAGCAATGCGGCTTTAGGGGTTGCGCAATTGCAAAGCTTGGCAAAAATTGAAAATGATGCGCAAGCTTATTTGTCAAAAA
TAATCAATGATTTGGGCTTGTCTGTGCGTGTGTTTCATCGTTTGTTAAGATTGGCCCGTACCTGCGCAGACTTGCAAAGA
AATGATACAGTTAAGGTTCAGCATATCATTCAGGCAATACAGTTGCGAAGGGCGGGGTCAAATCGCTTTAGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.296

98.611

0.486
  comM Vibrio campbellii strain DS40M4

48.996

98.81

0.484
  comM Haemophilus influenzae Rd KW20

47.809

99.603

0.476
  comM Glaesserella parasuis strain SC1401

45.908

99.405

0.456
  comM Legionella pneumophila str. Paris

43.615

100

0.44
  comM Legionella pneumophila strain ERS1305867

43.615

100

0.44
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.574

100

0.427

Multiple sequence alignment