Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B0W48_RS09080 Genome accession   NZ_CP019628
Coordinates   2048846..2050357 (+) Length   503 a.a.
NCBI ID   WP_077536668.1    Uniprot ID   -
Organism   Pseudoalteromonas aliena strain EH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2043846..2055357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0W48_RS09040 (B0W48_09085) - 2044166..2044789 (+) 624 WP_077536663.1 dUTP diphosphatase -
  B0W48_RS09045 (B0W48_09090) yrfG 2044805..2045452 (-) 648 WP_077536664.1 GMP/IMP nucleotidase -
  B0W48_RS09050 (B0W48_09095) nudE 2045514..2046086 (+) 573 WP_077536665.1 ADP compounds hydrolase NudE -
  B0W48_RS09055 (B0W48_09100) cysQ 2046079..2046882 (+) 804 WP_077536666.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  B0W48_RS09075 (B0W48_09120) - 2048197..2048811 (+) 615 WP_077536667.1 trimeric intracellular cation channel family protein -
  B0W48_RS09080 (B0W48_09125) comM 2048846..2050357 (+) 1512 WP_077536668.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B0W48_RS09085 (B0W48_09130) - 2050354..2051058 (-) 705 WP_077536669.1 response regulator transcription factor -
  B0W48_RS09090 (B0W48_09135) - 2051271..2053766 (-) 2496 WP_077538916.1 alpha/beta hydrolase family protein -
  B0W48_RS09095 (B0W48_09140) - 2053848..2054924 (+) 1077 WP_077536670.1 hemolysin family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55122.08 Da        Isoelectric Point: 7.0052

>NTDB_id=217399 B0W48_RS09080 WP_077536668.1 2048846..2050357(+) (comM) [Pseudoalteromonas aliena strain EH1]
MSLARIFSRAQVGISAPEVIVEVHLGNGLPAFHIVGLPEASVKESKDRVRSALENSQFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQIVCPDIHKYEFYGELALNGEIRGVNAILPSVLAAKEQDRCCFLPFANDSLASLVNGVKRKAVSSI
QEVWGDLLNQQPLPLNIEYPDCTQAPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMATIMPTMS
DDEAISTAALYSIIGQSIDLTNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGTVTISRAARQMEFPAQFQLITALNPSPTGSHTDKRATPDQVMRYLSRVSGPFIDRIDLQIELPRLTSVELQSTQPEE
SSAQVRARVEAAYYVQLKRQGKVNARLNNKEMSVHCELASAELQFLARASEKLSLSPRSYHRVIKVARTISDLKGAENIS
LNELKEALNYRAFERLIAQLTKY

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=217399 B0W48_RS09080 WP_077536668.1 2048846..2050357(+) (comM) [Pseudoalteromonas aliena strain EH1]
ATGTCGTTAGCTCGTATATTTTCTCGTGCTCAGGTGGGGATCAGTGCTCCAGAAGTTATTGTAGAAGTTCACCTAGGAAA
TGGTTTACCCGCTTTTCACATCGTAGGCCTGCCCGAAGCCTCTGTTAAAGAGTCAAAAGACAGAGTGCGTAGTGCACTCG
AAAATTCGCAATTTGGGTTTCCCGATCAACGCATAACTGTAAATTTAGCGCCCGCCGACTTACCTAAAGATGGCGGGCGG
TTTGATCTGGCTATCGCGGTGGGAATTTTAGTCGCTTCAGGGCAAATAGTGTGTCCTGACATTCATAAGTATGAGTTTTA
CGGGGAGCTTGCTCTTAATGGCGAGATACGTGGTGTAAATGCTATTTTGCCTTCGGTACTTGCCGCTAAAGAGCAAGACC
GTTGCTGCTTTTTACCTTTTGCAAATGATAGCTTAGCAAGTTTAGTTAACGGCGTTAAACGCAAAGCCGTTAGCTCGATT
CAAGAAGTATGGGGAGACTTACTTAATCAACAGCCATTACCACTAAATATAGAGTACCCAGATTGTACGCAAGCGCCAGA
CTTTTTACTTGATTTAAGCGATGTTAAAGGCCAACCTGGTGCAAAGCGAGTGCTCGAAATAGCCGCAGCTGGTGGGCATA
ATTTATTGTTTCTAGGCCCCCCAGGAACAGGAAAATCAATGCTCGCTCAACGAATGGCAACCATAATGCCGACAATGTCG
GATGATGAAGCTATTTCAACGGCTGCGCTTTACTCTATTATTGGTCAATCAATTGATTTAACTAATTGGCGACAAAGGCC
TTTTCGTAACCCACATCATACGTGCTCAGCGGTTGCTTTGGTTGGTGGATCTTCAAACCCCAAGCCTGGTGAGATTTCAC
TGGCACATAATGGGGTGCTCTTTTTAGACGAATTACCAGAGTTTGAACGTAAGGTGCTTGATTCACTGCGTGAGCCAATG
GAAACCGGTACGGTTACTATTTCGCGTGCTGCAAGGCAAATGGAGTTTCCTGCGCAATTTCAGCTCATTACAGCGTTAAA
CCCAAGCCCAACAGGAAGTCATACTGATAAACGTGCTACGCCCGATCAAGTAATGCGTTATTTATCAAGAGTATCAGGGC
CTTTTATTGATCGAATTGATTTACAAATTGAATTGCCTCGTTTAACAAGTGTAGAGCTACAAAGTACTCAACCGGAGGAA
AGTAGTGCACAGGTTAGAGCAAGAGTTGAGGCTGCTTATTATGTGCAGTTAAAACGCCAAGGCAAGGTGAACGCGAGGCT
CAACAATAAAGAAATGAGTGTGCATTGTGAACTGGCGTCTGCAGAATTACAGTTTTTAGCTAGAGCGAGTGAGAAGTTGT
CGTTATCACCACGCTCTTACCACCGAGTAATTAAAGTGGCGCGTACCATTAGTGATTTAAAAGGCGCTGAAAATATTAGT
TTAAATGAACTTAAAGAGGCACTTAACTATCGTGCATTTGAGCGTCTCATTGCACAATTAACCAAGTATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.151

100

0.563
  comM Haemophilus influenzae Rd KW20

53.74

100

0.543
  comM Vibrio campbellii strain DS40M4

53.968

100

0.541
  comM Glaesserella parasuis strain SC1401

53.557

100

0.539
  comM Legionella pneumophila str. Paris

50.699

99.602

0.505
  comM Legionella pneumophila strain ERS1305867

50.699

99.602

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.688

100

0.429

Multiple sequence alignment