Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   YPO_RS20610 Genome accession   NC_003143
Coordinates   4375698..4377221 (+) Length   507 a.a.
NCBI ID   WP_002212018.1    Uniprot ID   A0A0E1NR73
Organism   Yersinia pestis CO92     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4370698..4382221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YPO_RS20590 (YPO3899) - 4372226..4373152 (-) 927 WP_002212015.1 branched-chain amino acid transaminase -
  YPO_RS20595 (YPO3900) ilvM 4373175..4373432 (-) 258 WP_002212016.1 acetolactate synthase 2 small subunit -
  YPO_RS20600 (YPO3901) ilvG 4373429..4375075 (-) 1647 WP_002212017.1 acetolactate synthase 2 catalytic subunit -
  YPO_RS20605 ilvL 4375216..4375314 (-) 99 WP_002231873.1 ilv operon leader peptide -
  YPO_RS20610 (YPO3902) comM 4375698..4377221 (+) 1524 WP_002212018.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  YPO_RS20615 (YPO3903) - 4377478..4377816 (-) 339 WP_002212019.1 DUF413 domain-containing protein -
  YPO_RS20620 (YPO3904) hdfR 4377935..4378816 (+) 882 WP_002212020.1 HTH-type transcriptional regulator HdfR -
  YPO_RS20625 (YPO3905) yjfF 4378803..4379795 (-) 993 WP_002212021.1 galactofuranose ABC transporter, permease protein YjfF -
  YPO_RS20630 (YPO3906) ytfT 4379795..4380814 (-) 1020 WP_002212022.1 galactofuranose ABC transporter, ATP-binding protein YtfT -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54491.00 Da        Isoelectric Point: 7.6013

>NTDB_id=21687 YPO_RS20610 WP_002212018.1 4375698..4377221(+) (comM) [Yersinia pestis CO92]
MSLATIHTRATLGIQAPPVAVEVHISNGLPGLILVGLPETTVKEARDRVRSALINSGFNFPAKRITVSLAPADLPKEGGR
YDLPIALAILAASEQIPADKLAHYEFLGELALSGALRRVSGAIPAALTCSEANRQLILPTANGLEIGLIPQGNSWVADHL
LAVCGFLQGENPLAQGQPFEPAPSPDNHLDLHDIIGQSQAKRALEIAAAGGHNLLLLGPPGTGKTMLATRLTGLLPPLTD
QEALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLDELPEFERRVLDSLREPLE
SGEIIISRAAAKICFPAKVQLIAAMNPSPSGHYQGVHNRTPPQQILRYLAKLSGPFLDRFDLSIEVPLLPAGMLGAQKNQ
GESSATVKQRVLQARQRQMDRAGKINTQLTSQEVAEFCYLAPEDAAFLEQVLLTLGLSVRAWHHILKVARTIADLAQEKT
IQKSHLSEALSYRCMDRLLLQLHKSLM

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=21687 YPO_RS20610 WP_002212018.1 4375698..4377221(+) (comM) [Yersinia pestis CO92]
ATGTCACTGGCAACCATTCATACTCGCGCAACATTGGGCATTCAAGCCCCTCCTGTCGCGGTAGAAGTTCATATCAGCAA
TGGATTACCCGGATTGATATTGGTCGGCTTACCTGAAACAACGGTCAAAGAAGCACGGGATCGGGTTCGTAGCGCATTAA
TTAACAGCGGTTTTAATTTTCCCGCCAAGCGGATCACCGTCAGCCTGGCACCGGCAGATTTACCCAAAGAAGGCGGGCGC
TATGATCTCCCCATTGCTTTAGCCATCTTGGCCGCCTCAGAGCAGATCCCTGCGGATAAGTTAGCGCACTATGAGTTCTT
GGGTGAATTAGCCCTATCCGGCGCGTTAAGGCGCGTTAGCGGCGCAATTCCAGCAGCACTCACCTGTAGCGAAGCTAACC
GTCAGTTAATCCTTCCCACCGCTAATGGTCTTGAAATTGGTCTAATCCCACAAGGCAACTCCTGGGTCGCAGACCATTTA
TTAGCGGTATGCGGTTTCTTACAAGGTGAAAACCCCCTCGCACAGGGCCAGCCCTTCGAACCGGCCCCTTCACCGGATAA
CCACCTTGATTTACACGACATCATTGGTCAATCGCAGGCTAAACGTGCGTTAGAAATCGCGGCGGCAGGTGGTCATAACC
TGCTGTTACTCGGGCCACCAGGTACCGGTAAAACGATGCTGGCAACCCGCCTAACCGGGTTATTGCCTCCGCTGACCGAT
CAGGAGGCGTTAGAAGCAGCGGCGATCACCGGGTTGCTGCATAGCAACGCACTGCCAACACAATGGCGTTGCCGGGCCTT
TCGTGCCCCACACCATAGCGCATCGATGGCAGCGCTGATTGGCGGCGGCTCCATCCCCCGCCCCGGTGAGATATCACTGG
CCCATAACGGTGTGTTATTTCTCGATGAACTGCCTGAATTTGAACGCCGGGTACTGGATTCACTGCGCGAACCGTTGGAA
TCTGGCGAAATTATTATCTCCCGCGCGGCAGCCAAAATCTGTTTTCCAGCCAAAGTGCAACTTATCGCGGCGATGAACCC
TAGCCCCAGCGGCCACTACCAAGGCGTTCATAACCGCACACCGCCACAGCAAATTTTGCGCTATCTGGCCAAGTTGTCCG
GGCCATTTCTCGATAGATTCGATTTATCGATAGAAGTGCCATTACTGCCAGCCGGTATGCTGGGTGCGCAGAAAAATCAG
GGGGAGAGTAGCGCTACAGTCAAGCAGCGAGTGTTACAGGCCAGACAAAGGCAAATGGACCGGGCGGGGAAGATCAATAC
GCAGCTCACTAGCCAAGAGGTAGCAGAGTTTTGTTATTTAGCACCTGAGGATGCCGCGTTTCTCGAGCAGGTTTTACTGA
CACTCGGCCTGTCAGTACGTGCCTGGCACCATATTTTGAAAGTGGCGCGAACCATTGCCGATTTAGCGCAAGAAAAGACC
ATCCAAAAAAGTCATCTTTCAGAGGCGCTGAGCTATCGCTGTATGGATCGCCTGCTATTGCAGTTGCACAAAAGCCTGAT
GTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E1NR73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.834

99.803

0.637
  comM Glaesserella parasuis strain SC1401

62.722

100

0.627
  comM Vibrio cholerae strain A1552

62.55

99.014

0.619
  comM Vibrio campbellii strain DS40M4

62.351

99.014

0.617
  comM Legionella pneumophila str. Paris

51.6

98.619

0.509
  comM Legionella pneumophila strain ERS1305867

51.6

98.619

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.204

100

0.444

Multiple sequence alignment