Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   BWR56_RS07385 Genome accession   NZ_CP019562
Coordinates   1531030..1531686 (+) Length   218 a.a.
NCBI ID   WP_076984754.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1526030..1536686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS07345 (BWR56_1456) - 1526137..1527618 (-) 1482 WP_076984750.1 M protein trans-acting positive regulator PRD domain-containing protein -
  BWR56_RS07350 (BWR56_1457) - 1527915..1528151 (+) 237 WP_000964741.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  BWR56_RS07355 (BWR56_1458) amaP 1528251..1528814 (+) 564 WP_076984751.1 alkaline shock response membrane anchor protein AmaP -
  BWR56_RS07360 (BWR56_1459) - 1528825..1528995 (+) 171 WP_000454669.1 DUF2273 domain-containing protein -
  BWR56_RS07365 (BWR56_1460) - 1529007..1529591 (+) 585 WP_000072931.1 Asp23/Gls24 family envelope stress response protein -
  BWR56_RS07370 (BWR56_1461) - 1529633..1529836 (+) 204 WP_076984752.1 CsbD family protein -
  BWR56_RS07375 - 1529956..1530378 (-) 423 Protein_1440 thiol-disulfide isomerase -
  BWR56_RS07380 (BWR56_1463) - 1530505..1530960 (-) 456 WP_076984753.1 GNAT family N-acetyltransferase -
  BWR56_RS07385 (BWR56_1464) cclA/cilC 1531030..1531686 (+) 657 WP_076984754.1 prepilin peptidase Machinery gene
  BWR56_RS07390 (BWR56_1465) - 1531738..1532454 (+) 717 WP_081390681.1 EcsC family protein -
  BWR56_RS09860 - 1532598..1532714 (+) 117 Protein_1444 prepilin peptidase -
  BWR56_RS07395 (BWR56_1466) trpA 1532686..1533462 (-) 777 WP_076984756.1 tryptophan synthase subunit alpha -
  BWR56_RS07400 (BWR56_1467) trpB 1533455..1534678 (-) 1224 WP_076984757.1 tryptophan synthase subunit beta -
  BWR56_RS07405 (BWR56_1468) - 1534656..1535255 (-) 600 WP_196769359.1 phosphoribosylanthranilate isomerase -
  BWR56_RS07410 (BWR56_1469) trpC 1535242..1536009 (-) 768 WP_076984759.1 indole-3-glycerol phosphate synthase TrpC -

Sequence


Protein


Download         Length: 218 a.a.        Molecular weight: 24972.22 Da        Isoelectric Point: 8.0892

>NTDB_id=216332 BWR56_RS07385 WP_076984754.1 1531030..1531686(+) (cclA/cilC) [Streptococcus oralis strain S.MIT/ORALIS-351]
MIDLYFFLVGSILASFLGLVIDRFPEQSIIFPSSHCDSCQTRLRPLDLIPILSQVVNRFRCRYCKIRYPFWYALFELGLG
LLFLAWSWGWISLGQVILITAGLTLGIYDFRHQEYPLLVWLTFHLILMAFCGWSLIMLFFLVLGIIAHFIDIRMGAGDFL
FLASCALVFSATELLILIQFASAAGILAFLSQKKKERLPFVPFLLLATCVIIWCKLIL

Nucleotide


Download         Length: 657 bp        

>NTDB_id=216332 BWR56_RS07385 WP_076984754.1 1531030..1531686(+) (cclA/cilC) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGATTGATCTTTATTTTTTTCTTGTCGGGAGCATTCTCGCTTCTTTCTTGGGTTTGGTCATTGACCGTTTTCCAGAGCA
GTCTATTATCTTTCCTTCTAGCCACTGCGATTCCTGTCAAACTCGCTTGCGTCCGCTAGATTTGATTCCTATCCTTTCGC
AGGTGGTTAATCGTTTTCGCTGTCGCTACTGCAAGATTCGCTATCCATTCTGGTATGCCCTCTTTGAACTAGGCTTAGGA
CTCCTCTTTCTAGCTTGGTCTTGGGGGTGGATTTCCTTGGGTCAAGTCATCCTAATCACTGCTGGTTTGACCTTGGGCAT
CTACGACTTTCGCCATCAGGAATATCCCTTACTAGTCTGGCTGACGTTCCATCTAATCCTCATGGCTTTCTGTGGTTGGA
GTCTGATTATGCTCTTCTTCCTTGTTCTAGGAATCATAGCCCATTTTATCGATATTCGCATGGGCGCAGGGGATTTTCTC
TTTCTGGCTTCTTGTGCTCTCGTCTTTAGCGCGACCGAATTACTCATCTTGATCCAGTTTGCTTCTGCGGCAGGGATTTT
AGCCTTTCTTTCGCAAAAGAAAAAGGAAAGACTTCCTTTTGTGCCTTTCCTCTTACTTGCTACTTGTGTGATTATTTGGT
GTAAATTAATATTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis NCTC 12261

89.45

100

0.895

  cclA/cilC Streptococcus mitis SK321

88.073

100

0.881

  cclA/cilC Streptococcus pneumoniae Rx1

85.78

100

0.858

  cclA/cilC Streptococcus pneumoniae D39

85.78

100

0.858

  cclA/cilC Streptococcus pneumoniae R6

85.78

100

0.858

  cclA/cilC Streptococcus pneumoniae TIGR4

85.321

100

0.853


Multiple sequence alignment