Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   BWR56_RS03865 Genome accession   NZ_CP019562
Coordinates   797526..798482 (+) Length   318 a.a.
NCBI ID   WP_049505725.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 792526..803482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS03850 (BWR56_0759) smpB 794781..795248 (+) 468 WP_001051742.1 SsrA-binding protein SmpB -
  BWR56_RS03855 (BWR56_0760) tehB 795263..796123 (+) 861 WP_049505723.1 SAM-dependent methyltransferase TehB -
  BWR56_RS03860 (BWR56_0761) - 796301..797449 (+) 1149 WP_049505724.1 DUF1887 family protein -
  BWR56_RS03865 (BWR56_0762) coiA 797526..798482 (+) 957 WP_049505725.1 competence protein CoiA Machinery gene
  BWR56_RS03870 (BWR56_0763) pepF 798501..800303 (+) 1803 WP_049505726.1 oligoendopeptidase F Regulator
  BWR56_RS03875 (BWR56_0764) - 800305..801018 (+) 714 WP_076984889.1 O-methyltransferase -
  BWR56_RS10090 (BWR56_0765) - 801232..801393 (+) 162 WP_394355674.1 recombinase family protein -
  BWR56_RS10095 (BWR56_0766) - 801415..801690 (+) 276 WP_394355675.1 hypothetical protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37836.35 Da        Isoelectric Point: 9.5513

>NTDB_id=216319 BWR56_RS03865 WP_049505725.1 797526..798482(+) (coiA) [Streptococcus oralis strain S.MIT/ORALIS-351]
MFVARDAKGNLVNALEKDVTKQAYTCPACGGGLRLRQGQSIRTHFAHERLRDCIAIFENESPEHLGNKEALYHWVKKDNQ
VALEYSLPEIQQIADVLVNEKLALEVQCSPLSQKLLGDRSQGYRSQGYQVIWLLGEKLWLKERLTQLQRGFLYFSQNMGF
YVWELDLKKQVLRLKYLLHQDLRGKLHFQVKEFSYGQGNLLEILRFPYQKQKLPRFAVVQDSTICHYIRQQLYYQTPYWM
KKQEQAYHRGDNLLNRQLDDWYPQVKPIESGDFLQIETDLTSYYRNFQAYYQKNPKNNRQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=216319 BWR56_RS03865 WP_049505725.1 797526..798482(+) (coiA) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGTTTGTAGCCAGAGATGCCAAGGGGAATTTGGTGAATGCCCTCGAAAAAGATGTGACCAAGCAAGCTTATACTTGTCC
AGCCTGTGGGGGCGGGCTACGATTACGCCAAGGACAGAGTATTCGAACGCACTTTGCCCATGAAAGGTTAAGAGATTGTA
TTGCTATTTTTGAGAATGAAAGTCCAGAACACTTGGGAAATAAAGAGGCCCTTTATCATTGGGTCAAGAAGGACAATCAA
GTCGCCTTAGAATATAGTCTGCCCGAGATTCAGCAGATAGCAGATGTTCTCGTCAATGAGAAACTAGCTCTGGAGGTTCA
GTGCAGTCCCTTGTCTCAAAAGCTTTTAGGCGATAGAAGTCAAGGATACCGCAGCCAGGGCTATCAGGTTATCTGGCTAC
TGGGAGAAAAACTCTGGTTAAAAGAGCGATTAACACAATTGCAAAGGGGATTTCTCTATTTTAGTCAAAATATGGGATTC
TATGTTTGGGAACTAGATCTCAAAAAGCAAGTTTTGAGACTTAAATACCTTTTACATCAGGACCTACGTGGCAAGCTTCA
TTTTCAGGTCAAGGAATTTTCCTATGGCCAAGGAAATCTCTTGGAAATCTTACGATTTCCTTATCAAAAACAAAAACTGC
CTCGTTTTGCAGTTGTGCAAGATTCCACTATCTGTCACTACATTCGCCAGCAGTTGTACTACCAAACGCCCTACTGGATG
AAAAAACAGGAGCAAGCTTATCATCGAGGAGACAATCTATTAAACCGTCAACTAGACGACTGGTATCCTCAAGTCAAGCC
GATAGAATCAGGTGATTTTTTGCAGATTGAAACGGATTTGACTAGCTATTATAGAAATTTTCAGGCTTACTATCAAAAAA
ATCCGAAAAATAATCGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(12-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

71.069

100

0.711
  coiA Streptococcus pneumoniae D39

71.069

100

0.711
  coiA Streptococcus pneumoniae R6

71.069

100

0.711
  coiA Streptococcus pneumoniae TIGR4

70.755

100

0.708
  coiA Streptococcus mitis NCTC 12261

70.44

100

0.704
  coiA Lactococcus lactis subsp. cremoris KW2

41.538

100

0.425

Multiple sequence alignment