Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BWR56_RS03870 Genome accession   NZ_CP019562
Coordinates   798501..800303 (+) Length   600 a.a.
NCBI ID   WP_049505726.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 793501..805303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS03850 (BWR56_0759) smpB 794781..795248 (+) 468 WP_001051742.1 SsrA-binding protein SmpB -
  BWR56_RS03855 (BWR56_0760) tehB 795263..796123 (+) 861 WP_049505723.1 SAM-dependent methyltransferase TehB -
  BWR56_RS03860 (BWR56_0761) - 796301..797449 (+) 1149 WP_049505724.1 DUF1887 family protein -
  BWR56_RS03865 (BWR56_0762) coiA 797526..798482 (+) 957 WP_049505725.1 competence protein CoiA Machinery gene
  BWR56_RS03870 (BWR56_0763) pepF 798501..800303 (+) 1803 WP_049505726.1 oligoendopeptidase F Regulator
  BWR56_RS03875 (BWR56_0764) - 800305..801018 (+) 714 WP_076984889.1 O-methyltransferase -
  BWR56_RS10090 (BWR56_0765) - 801232..801393 (+) 162 WP_394355674.1 recombinase family protein -
  BWR56_RS10095 (BWR56_0766) - 801415..801690 (+) 276 WP_394355675.1 hypothetical protein -
  BWR56_RS03885 (BWR56_0767) - 801994..803745 (+) 1752 WP_076984491.1 LPXTG cell wall anchor domain-containing protein -
  BWR56_RS03890 (BWR56_0768) prsA 803935..804876 (+) 942 WP_000728080.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69780.75 Da        Isoelectric Point: 4.6187

>NTDB_id=216320 BWR56_RS03870 WP_049505726.1 798501..800303(+) (pepF) [Streptococcus oralis strain S.MIT/ORALIS-351]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEKVQTAAQYEGHLLDSADSLLEITEFSLDLERQVEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLEQAFSFYEPEFMEISEEQYAVFLEAQPKLQVYKHFFDKLLQKKDHVLSQREEELLAGA
GEIFGAASETFAILDNADISFPYVLDDEGKEVQLSHGTYIRLMESKNREVRRGAYEALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLNLRSKILGISDLKMYDVYTPLSSVDYSFTYEEALK
KAEEALAVLGDDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPQIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=216320 BWR56_RS03870 WP_049505726.1 798501..800303(+) (pepF) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGGTATTACAACGACATGAAATAAATGAAAAAGATACATGGGATCTTTCGACAATCTACCCAACAGACCAGGCTTGGGA
AGAAGCCTTGAAAGATTTAACTGAAAAAGTACAAACAGCAGCCCAGTATGAGGGGCATCTCTTGGATAGCGCAGACAGTT
TGCTTGAGATTACAGAATTCTCACTTGACTTGGAACGCCAAGTTGAAAAGCTTTATGTCTATGCGCATATGAAAAATGAC
CAGGACACGCGTGAAGCCAAGTATCAAGAGTACTATGCTAAGGCAATGACCCTATACAGTCAGTTAGAACAAGCCTTTTC
ATTCTATGAACCTGAGTTTATGGAGATTAGCGAAGAGCAGTATGCGGTCTTCCTAGAAGCTCAACCAAAACTCCAAGTTT
ACAAGCACTTTTTTGACAAGCTCTTGCAAAAGAAAGACCATGTTCTTTCGCAACGTGAGGAAGAATTGCTTGCTGGAGCA
GGAGAAATCTTTGGCGCTGCTAGCGAAACCTTCGCTATTTTGGACAATGCGGATATTAGCTTCCCATATGTGCTTGATGA
CGAAGGCAAGGAAGTGCAACTCTCACACGGTACTTACATCCGTTTGATGGAGTCTAAAAACCGTGAAGTGCGTCGTGGTG
CCTATGAAGCCCTTTATGCGACTTACGAGCAATTCCAACACACTTATGCCAAGACCTTGCAGACAAATGTTAAGGTGCAA
AACTACCGTGCCAAAGTTCGCAACTATAAGAGTGCTCGCCATGCAGCCCTCGCAGCCAATTTTGTTCCAGAAAGTGTCTA
TGACAATCTAGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGTTACCTTAACCTTCGTTCTAAAATCTTGGGAA
TTTCAGATCTCAAGATGTATGATGTCTACACACCACTCTCGTCAGTAGATTATAGCTTTACCTACGAGGAAGCCTTGAAA
AAGGCAGAAGAAGCTTTGGCAGTTTTAGGTGACGACTACTTGAGCCGTGTCAAACGTGCCTTCAGCGAGCGTTGGATTGA
TGTCTATGAAAATCAAGGCAAGCGTTCTGGTGCCTACTCTGGTGGTTCTTACGATACCAATGCCTTTATGCTTTTAAACT
GGCAGGACAATCTAGACAATCTCTTTACCCTTGTCCATGAAACAGGTCACAGTATGCACTCAAGCTATACTCGTGAAACT
CAACCTTATGTTTACGGGGATTACTCTATCTTCTTGGCTGAGATTGCCTCAACGACTAATGAAAATATCTTGACAGAGAA
ATTGTTGGAAGAAGTGGAAGACGATGCGACACGCTTTGCTATCCTCAATAACTTCCTAGATGGTTTCCGTGGAACAGTTT
TCCGTCAAACTCAATTCGCTGAGTTTGAACATGCCATCCACCAAGCAGACCAAAATGGAGAAGTCTTGACAAGTGATTTC
CTCAATAAGCTCTACGCTGACTTGAACCAGGAGTACTATGGACTCAGCAAGGAAGACAATCCTCAGATCCAATACGAGTG
GGCACGAATTCCACATTTCTACTATAACTACTATGTTTATCAATATTCAACAGGTTTTGCAGCTGCTTCAGCCTTGGCTG
AGAAGATTGTCCATGGTAGTCAAGAAGACCGTGACCGCTATATCGACTACCTCAAGGCAGGTAAGTCAGACTATCCACTC
AATGTCATGAGAAAAGCGGGAGTGGATATGGAGAAGGAAGACTATCTTAACGATGCCTTTGCCGTCTTTGAACGTCGCTT
GAACGAGTTTGAAGCCCTTGTTGAAAAATTGGGATTGGCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.282

99.333

0.668

Multiple sequence alignment