Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   BZG42_RS03355 Genome accession   NZ_CP019557
Coordinates   685173..686111 (+) Length   312 a.a.
NCBI ID   WP_155995498.1    Uniprot ID   -
Organism   Streptococcus sp. DAT741     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 680173..691111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG42_RS03340 (BZG42_03360) - 680841..681443 (+) 603 WP_227985557.1 DUF3885 domain-containing protein -
  BZG42_RS03345 (BZG42_03365) - 682257..682853 (-) 597 WP_155995490.1 DUF1361 domain-containing protein -
  BZG42_RS03350 (BZG42_03370) metG 683105..685108 (+) 2004 WP_155995488.1 methionine--tRNA ligase -
  BZG42_RS03355 (BZG42_03375) coiA 685173..686111 (+) 939 WP_155995498.1 competence protein CoiA family protein Machinery gene
  BZG42_RS03360 (BZG42_03380) pepF 686184..687986 (+) 1803 WP_155995486.1 oligoendopeptidase F Regulator
  BZG42_RS03365 (BZG42_03390) - 688444..688992 (+) 549 WP_155995483.1 DUF6630 family protein -
  BZG42_RS03370 (BZG42_03395) - 689070..689789 (+) 720 WP_155995482.1 O-methyltransferase -
  BZG42_RS03375 (BZG42_03400) - 689851..690867 (+) 1017 WP_120171491.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 36292.78 Da        Isoelectric Point: 9.1908

>NTDB_id=216217 BZG42_RS03355 WP_155995498.1 685173..686111(+) (coiA) [Streptococcus sp. DAT741]
MLVAINENGLLFNLLENPAPQGSFNCPGCGGPVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSYLYNWLIEHNK
VELEKCLPNLGQVADLFVNNHLALEVQCSSLSLSRLQERTSSYHKSGFQVLWLLGKDLWLKDRLSKLHKQFLSFSLNMGF
YLWELDDEKQELRLHYLIHEDLRGRVHSLTKRFAFGQGNLLDILRLPFTKQSLSRMTCPIDNHLPQYIAQQLYYKSPKWL
TLQAEAYCQGDNLLTKTALDWYPHVRLPSSAIGFAQIRKNLAPIYQAFDRFYKKTKAQKEQVLYSPAYYCQK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=216217 BZG42_RS03355 WP_155995498.1 685173..686111(+) (coiA) [Streptococcus sp. DAT741]
ATGCTTGTTGCTATCAATGAAAACGGCTTGTTGTTTAATCTTTTAGAAAATCCTGCGCCGCAAGGCTCATTCAACTGTCC
AGGCTGTGGTGGTCCTGTACGATATAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCTCACGTTACCCTGCGGGATTGTC
ATTACTTCTCCGAGAATGAGTCCGCCCAGCACCTATCGCTCAAGTCTTATCTGTATAACTGGTTGATTGAACACAATAAG
GTAGAGCTTGAAAAATGTTTACCAAACTTGGGACAGGTCGCAGATCTATTTGTCAATAATCATCTGGCCCTAGAAGTCCA
GTGTTCTAGTCTATCTCTTTCACGTTTGCAAGAACGAACAAGTTCTTATCATAAGTCAGGTTTTCAGGTATTGTGGCTGC
TAGGAAAAGACCTCTGGCTTAAAGACAGGCTTTCCAAACTACATAAGCAATTTCTCTCCTTCAGTCTTAATATGGGGTTT
TACTTATGGGAATTGGATGATGAAAAGCAGGAATTGCGACTTCATTATCTCATTCATGAAGATCTGCGTGGTAGGGTGCA
TTCCCTGACCAAGAGATTTGCATTTGGTCAGGGAAACCTGTTAGATATTTTGCGGCTACCTTTCACCAAGCAGAGTCTAT
CTAGGATGACCTGTCCGATAGACAATCATCTACCTCAATATATCGCCCAGCAGCTTTATTATAAATCTCCTAAATGGTTG
ACTCTACAGGCTGAAGCTTATTGTCAAGGTGACAATCTATTAACCAAGACTGCTCTGGATTGGTATCCCCATGTCCGCCT
TCCAAGCTCTGCTATTGGCTTTGCCCAAATCAGAAAAAATCTAGCTCCTATCTACCAAGCTTTTGATAGATTTTATAAAA
AAACGAAAGCTCAGAAGGAACAAGTCCTGTATTCACCGGCCTACTACTGCCAGAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

50.641

100

0.506
  coiA Streptococcus pneumoniae TIGR4

49.679

100

0.497
  coiA Streptococcus pneumoniae Rx1

49.679

100

0.497
  coiA Streptococcus pneumoniae D39

49.679

100

0.497
  coiA Streptococcus pneumoniae R6

49.679

100

0.497
  coiA Lactococcus lactis subsp. cremoris KW2

42.368

100

0.436

Multiple sequence alignment