Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BZG42_RS03360 Genome accession   NZ_CP019557
Coordinates   686184..687986 (+) Length   600 a.a.
NCBI ID   WP_155995486.1    Uniprot ID   -
Organism   Streptococcus sp. DAT741     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 681184..692986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG42_RS03345 (BZG42_03365) - 682257..682853 (-) 597 WP_155995490.1 DUF1361 domain-containing protein -
  BZG42_RS03350 (BZG42_03370) metG 683105..685108 (+) 2004 WP_155995488.1 methionine--tRNA ligase -
  BZG42_RS03355 (BZG42_03375) coiA 685173..686111 (+) 939 WP_155995498.1 competence protein CoiA family protein Machinery gene
  BZG42_RS03360 (BZG42_03380) pepF 686184..687986 (+) 1803 WP_155995486.1 oligoendopeptidase F Regulator
  BZG42_RS03365 (BZG42_03390) - 688444..688992 (+) 549 WP_155995483.1 DUF6630 family protein -
  BZG42_RS03370 (BZG42_03395) - 689070..689789 (+) 720 WP_155995482.1 O-methyltransferase -
  BZG42_RS03375 (BZG42_03400) - 689851..690867 (+) 1017 WP_120171491.1 peptidylprolyl isomerase -
  BZG42_RS03380 (BZG42_03405) - 691068..691553 (+) 486 WP_024531729.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69468.83 Da        Isoelectric Point: 4.7046

>NTDB_id=216218 BZG42_RS03360 WP_155995486.1 686184..687986(+) (pepF) [Streptococcus sp. DAT741]
MSKQRHEIEEKYQWDLTTIFPTDEAWEEEYIALQAETEKTKDFAGHLLDSAKNLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAISLYSAFSQAFAFYEPEFMAITEEQLKAFKTKEPALIQYNHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGNLVPLSHGNYIHFMESKNREVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHAALAANFIPESVYDTLVSAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYAPLSDFSTKISYEDALK
KCQETLEIFGEDYSTIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMFTLIHETGHSLHSMLTRRT
QPYVYGHYTLFLAEIASTTNENLLTEKLLAEVKDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGKMNEKYYGLSAEDNPEIQYEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEELVERGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=216218 BZG42_RS03360 WP_155995486.1 686184..687986(+) (pepF) [Streptococcus sp. DAT741]
ATGTCAAAACAACGTCATGAGATTGAAGAAAAATATCAGTGGGATCTAACCACTATTTTCCCAACCGATGAAGCTTGGGA
GGAAGAATATATTGCCCTACAGGCTGAAACAGAAAAGACAAAAGATTTTGCAGGACATTTGTTGGACTCTGCTAAAAATC
TTTTAGAGATTAGCGAGACCCAGCTTGGTTTGATGCGCCGTATCGAAAAACTGTATGTTTATGCTTCTATGAAGAACGAC
CAAGATACTCGTGAAGGGAAATACCAAGAATTTCAAGCCAAAGCTATCAGCCTCTATTCTGCTTTTTCACAAGCCTTTGC
CTTTTACGAGCCAGAATTTATGGCGATTACAGAAGAGCAGTTGAAGGCTTTCAAGACTAAGGAACCAGCCTTGATTCAAT
ACAATCACCAATTTGAAAAGTTGTTAGCCGCAAAAGATCATGTTCTATCTCAAGAAGTAGAAGAAGTTCTAGCTGCAACC
AGTGAAATTTTTGAATCCCCAGCAGAAACCTTCTCGGTCTTAGATAATGCCAGTTTGCGTTTCCCTGAAATTGCAGATGA
AGATGGCAATCTAGTGCCTCTGTCGCACGGTAATTACATCCATTTTATGGAGTCTAAAAATCGTGAAGTTCGTCAGGAAG
CCTATGAAGCCATGTACGGAACCTATGAGCAATTCCAGCATACCTATGCAAAGACACTTCAGTCCAATGTTAAGGTCAAT
AACTTGAAAGCTCGTTTGCGTAAGTACGATTCGGCTCGCCACGCAGCACTTGCAGCTAATTTTATTCCAGAATCTGTCTA
TGATACATTGGTATCAGCTGTCAATAAGCACCTGCCTCTACTTCATCGTTATATCAACTTGCGTAAGAAACTCTTGGGAA
TTGATGACCTCAAAATGTACGACATGTACGCCCCCTTGTCCGATTTTAGTACAAAGATTTCTTATGAGGATGCACTCAAA
AAATGTCAAGAAACGTTGGAAATTTTTGGTGAAGACTACTCAACTATTGTTAAAGAAGCCTTTGAAAATCGCTGGATTGA
TGTTCATGTTAACGAAGGAAAGCGTTCAGGAGCTTATTCAGGTGGCGCCTATGATACCAATGCCTTCATGTTGCTCAACT
GGCAGGACAACTTGGATAACATGTTTACTTTGATTCACGAAACAGGTCACTCCCTTCATTCCATGCTGACTCGTAGAACC
CAGCCTTATGTCTATGGACATTACACTCTCTTCTTGGCAGAAATTGCCTCAACTACAAACGAGAACCTCCTCACTGAAAA
GCTCTTGGCAGAAGTGAAGGACGATAAGGAGCGCTTTGCAATCCTCAACCACTATTTGGATGGTTTCCGTGGCACGGTAT
TCCGTCAGACTCAATTTGCTGAGTTTGAACAAGCTATCTATAAAGCCGACCAAGAAGGGCAGGTTTTGACCGCTGACTTC
CTCAATGAGTTGTACGGTAAGATGAATGAGAAATATTATGGACTTTCTGCGGAAGACAATCCTGAAATCCAGTATGAATG
GGCACGCATTCCGCACTTCTATTACAATTTCTATGTTTACCAGTATGCGACGGGCTTTGCAGCGGCATCAGCCCTTGCCA
ATAAGATTGTCAATGGAAGCCCAGAAGACAAGGAAAACTACCTAAACTATCTGAAGGCTGGTAGTTCCGATTATTCTCTA
AATGTTATCGCCAAAGCTGGTGTGGATATGACTAAAGAAGACTACCTAAATGACGCTTTCAAGGTCTTTGAAGCTCGCTT
GGAGGAACTTGAAGAGCTTGTCGAAAGAGGAGTACATCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70

100

0.7

Multiple sequence alignment