Detailed information NTG0216090

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: BZG29_RS05240
• Genome accession: NZ_CP019510
• Coordinates: 1183165..1184304 (-)
• Length: 379 a.a.
• NCBI ID: WP_171984942.1
• Uniprot ID: -
• Organism: Janthinobacterium sp. LM6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1178165..1189304

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BZG29_RS05225 (BZG29_05235)	glcF	1179017..1180243 (+)	1227	WP_077399663.1	glycolate oxidase subunit GlcF	-
BZG29_RS05230 (BZG29_05240)	-	1180381..1182492 (-)	2112	WP_077399666.1	EAL domain-containing protein	-
BZG29_RS05235 (BZG29_05245)	-	1182678..1183163 (-)	486	WP_077399669.1	glutathione peroxidase	-
BZG29_RS05240 (BZG29_05250)	pilU	1183165..1184304 (-)	1140	WP_171984942.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
BZG29_RS05245 (BZG29_05255)	pilT	1184308..1185351 (-)	1044	WP_070258779.1	type IV pilus twitching motility protein PilT	Machinery gene
BZG29_RS05250 (BZG29_05260)	-	1185422..1186123 (+)	702	WP_077399672.1	YggS family pyridoxal phosphate-dependent enzyme	-
BZG29_RS05255 (BZG29_05265)	proC	1186146..1186976 (+)	831	WP_077399676.1	pyrroline-5-carboxylate reductase	-
BZG29_RS05260 (BZG29_05270)	-	1186989..1187705 (-)	717	WP_077399680.1	anti-sigma factor	-
BZG29_RS05265 (BZG29_05275)	-	1187702..1188259 (-)	558	WP_253192787.1	sigma-70 family RNA polymerase sigma factor	-
BZG29_RS05270 (BZG29_05280)	-	1188490..1189047 (-)	558	WP_077399685.1	DUF3455 domain-containing protein	-

Sequence

Protein

• Length: 379 a.a.
• Molecular weight: 41062.14 Da
• Isoelectric Point: 6.6042

>NTDB_id=216090 BZG29_RS05240 WP_171984942.1 1183165..1184304(-) (pilU) [Janthinobacterium sp. LM6]
MQTTHEHYGAMHALLAQMHARGGSDLFITAGFPAAIKLDGKLTPLVEAPLDAAQAAGYVRAVMNERQAAEFESSREANFA
ISPEGLGRFRVSAFMQMGQAGMVLRLINTAIPSLAGLGLPAILQDVVMSKRGLVIMVGATGCGKSTTLAAMVGHRNAHSH
GHIITIEDPVEFIHPHGNCIVTQREVGVDTDDWATALKNTLRQAPDVIQIGEIRDRDTMDHAIAFAETGHLCLATLHANN
ANQALDRIINFFPEERRQQLLMDLSLNLKGMISQRLIPNKDGGGRQAALEILLNSPLMSDLIFKGQVHEIKELMKKSREH
GMQTFDQALFDLHEAGAISYEDALRNADSVNDLRLTIKLKGAAAPEAAPPSNATRLGLL

Nucleotide

• Length: 1140 bp

>NTDB_id=216090 BZG29_RS05240 WP_171984942.1 1183165..1184304(-) (pilU) [Janthinobacterium sp. LM6]
ATGCAGACGACGCACGAACACTATGGCGCCATGCACGCGCTGCTGGCGCAGATGCACGCACGGGGCGGCTCCGACCTGTT
CATCACGGCCGGCTTTCCCGCCGCCATCAAGCTCGACGGCAAGCTGACGCCGCTGGTAGAAGCCCCGCTCGATGCGGCCC
AGGCGGCCGGCTACGTGCGCGCCGTCATGAACGAGCGCCAGGCGGCCGAGTTCGAGTCCAGCCGCGAAGCCAATTTCGCC
ATCAGCCCGGAGGGGCTCGGGCGTTTCCGCGTATCCGCCTTCATGCAGATGGGCCAGGCAGGCATGGTCTTGCGGTTGAT
CAATACCGCCATCCCCAGCCTCGCTGGGCTCGGTTTACCCGCCATCCTGCAAGACGTGGTGATGAGCAAGCGCGGCCTCG
TCATCATGGTGGGCGCCACGGGCTGCGGCAAGTCGACCACCCTGGCGGCCATGGTGGGCCACCGCAACGCCCACAGCCAC
GGCCACATCATCACCATCGAAGACCCCGTGGAATTCATCCATCCGCACGGCAACTGCATCGTCACCCAGCGCGAAGTGGG
CGTCGATACGGACGACTGGGCCACGGCCCTGAAAAACACCCTGCGCCAGGCGCCCGACGTGATCCAGATCGGAGAGATAC
GCGACCGCGACACCATGGACCACGCCATCGCGTTTGCCGAAACGGGCCATCTGTGCCTGGCGACCTTGCACGCGAACAAC
GCCAACCAGGCGCTGGACCGCATCATCAATTTCTTCCCCGAAGAGCGGCGCCAGCAGTTGCTGATGGATCTGTCGCTGAA
TCTGAAGGGCATGATTTCGCAACGCTTGATTCCCAACAAGGATGGCGGCGGACGCCAGGCGGCGCTGGAAATCCTGCTCA
ATTCGCCGCTGATGAGCGACCTGATCTTCAAGGGCCAGGTGCACGAGATCAAGGAATTGATGAAAAAATCGCGCGAGCAT
GGCATGCAGACTTTCGACCAGGCCCTGTTCGACCTGCACGAGGCGGGCGCCATCAGCTATGAAGACGCGCTGCGCAATGC
GGACTCCGTCAACGACCTGCGCCTGACGATCAAGCTCAAGGGCGCAGCGGCGCCGGAAGCGGCACCACCCTCAAATGCCA
CCAGACTGGGACTCCTCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (23-278)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	64.162	91.293	0.586
pilU	Acinetobacter baylyi ADP1	58.082	96.306	0.559
pilU	Vibrio cholerae strain A1552	57.101	89.182	0.509
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.296	94.459	0.409