Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BZG29_RS04550 Genome accession   NZ_CP019510
Coordinates   1030296..1031816 (-) Length   506 a.a.
NCBI ID   WP_077399350.1    Uniprot ID   -
Organism   Janthinobacterium sp. LM6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1025296..1036816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG29_RS04540 (BZG29_04550) - 1029161..1029505 (-) 345 WP_070224486.1 DUF1840 domain-containing protein -
  BZG29_RS04545 (BZG29_04555) - 1029686..1030231 (-) 546 WP_077399347.1 hypothetical protein -
  BZG29_RS04550 (BZG29_04560) comM 1030296..1031816 (-) 1521 WP_077399350.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BZG29_RS04555 (BZG29_04565) - 1031931..1032179 (-) 249 WP_035824443.1 accessory factor UbiK family protein -
  BZG29_RS04560 (BZG29_04570) - 1032449..1033216 (+) 768 WP_077399353.1 TorF family putative porin -
  BZG29_RS04565 (BZG29_04575) - 1033228..1033566 (+) 339 WP_010393464.1 P-II family nitrogen regulator -
  BZG29_RS04570 (BZG29_04580) amt 1033578..1035104 (+) 1527 WP_077399356.1 ammonium transporter -
  BZG29_RS04575 (BZG29_04585) gshA 1035309..1036607 (+) 1299 WP_077399358.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54710.70 Da        Isoelectric Point: 8.7447

>NTDB_id=216088 BZG29_RS04550 WP_077399350.1 1030296..1031816(-) (comM) [Janthinobacterium sp. LM6]
MSLAVLKSRALAGMEAPEVSVEVHLANGLPSFTIVGLPDTEVKESRDRVRAALQNCGFEMPARRITANLAPADLPKESGR
FDLPIALGILAASGQLPGDQLHHYEFAGELSLSGQLRPIRGALAMTFAMQRSQSGAPRAFILPQANADEAALVRDACIYP
AHSLLEVCAHFARHASQTALQRHQPVLTPHAFPYPDFADVQGQQQARRALEVAAAGGHNVLMVGPPGAGKTMLASRFPGV
LPPMSDEEALESAAVHSLGSHFKVEHWKRRPYRAPHQTASGVALVGGGNVPRPGEISLAHCGVLFLDEIAEFHRRVLDVL
RQPMESGVISISRAARQAEFPARFQLIAAMNPCPCGYLGHASGRCRCTPDAVLRYHNRLSGPLLDRIDLQIEVAAMPPAA
LGRRAGAGESTQAIATRVAAAYALQLARQGKANQQLSNTEIEQHCRLEPHGEQLLHGAMTRLHWSARTYHRVLRVSRSIA
DLAGSPAITQPHVAEAIQYRRVLREM

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=216088 BZG29_RS04550 WP_077399350.1 1030296..1031816(-) (comM) [Janthinobacterium sp. LM6]
ATGAGCCTGGCCGTCCTGAAAAGCCGCGCCCTGGCCGGCATGGAGGCGCCCGAGGTAAGTGTCGAAGTCCACCTTGCCAA
TGGCTTGCCCTCGTTTACGATTGTCGGCCTGCCGGATACGGAAGTGAAGGAGTCGCGCGACCGCGTGCGTGCCGCGTTGC
AAAACTGCGGCTTCGAGATGCCGGCGCGGCGCATCACGGCCAATCTGGCGCCGGCAGACTTGCCCAAGGAATCGGGCCGC
TTCGACTTGCCCATCGCACTGGGCATCCTGGCCGCCTCCGGCCAGTTGCCGGGCGACCAATTACACCACTATGAATTCGC
GGGCGAACTATCGCTGTCTGGCCAGTTACGTCCCATCCGCGGCGCCCTGGCCATGACCTTTGCCATGCAGCGCAGCCAGT
CGGGCGCGCCACGCGCCTTCATCCTGCCGCAGGCAAACGCGGACGAGGCGGCTCTCGTCCGCGATGCCTGCATCTATCCC
GCCCACAGCCTGCTCGAGGTCTGCGCGCATTTTGCCAGGCACGCCAGCCAGACTGCCCTGCAACGCCACCAGCCCGTGCT
GACACCGCACGCTTTTCCCTATCCCGACTTTGCCGACGTGCAAGGGCAGCAGCAGGCGCGACGCGCACTGGAAGTGGCGG
CAGCGGGCGGTCACAACGTCCTGATGGTGGGACCACCGGGCGCAGGCAAGACCATGCTGGCCAGCCGCTTCCCCGGCGTG
CTGCCGCCCATGAGCGATGAAGAGGCGCTGGAATCGGCTGCGGTGCATTCGCTGGGCAGCCACTTCAAGGTGGAACATTG
GAAACGGCGGCCCTATCGCGCCCCGCACCAGACGGCATCCGGCGTAGCCCTGGTGGGCGGCGGCAACGTGCCGCGGCCAG
GTGAAATCTCGCTGGCCCACTGCGGCGTGCTGTTTCTCGATGAAATTGCCGAATTCCACCGCCGGGTGCTCGATGTGCTG
CGCCAGCCCATGGAATCGGGCGTGATCAGCATTTCACGCGCGGCCCGCCAGGCCGAGTTCCCTGCCCGTTTTCAATTGAT
CGCCGCCATGAATCCCTGCCCGTGCGGCTATCTGGGCCACGCTTCCGGCCGTTGCCGCTGTACGCCAGACGCCGTGTTGC
GTTATCACAATCGTCTGTCGGGCCCGCTGCTCGACCGTATCGACCTGCAGATTGAGGTGGCCGCCATGCCGCCCGCGGCG
CTGGGGCGACGTGCAGGCGCCGGCGAAAGTACGCAAGCGATCGCCACGCGGGTAGCGGCAGCCTATGCCTTGCAGCTGGC
ACGCCAGGGAAAAGCGAACCAGCAGCTGAGCAACACGGAAATCGAACAACATTGTCGCCTGGAACCACATGGCGAACAGT
TGTTGCACGGCGCCATGACGCGCCTGCACTGGTCGGCGCGCACCTACCACCGGGTGCTGCGCGTGTCGCGCAGCATCGCG
GACCTGGCGGGCAGCCCCGCCATCACGCAGCCGCATGTTGCCGAAGCGATCCAGTACCGGCGCGTACTGCGCGAGATGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.62

100

0.541
  comM Glaesserella parasuis strain SC1401

53.543

100

0.538
  comM Vibrio cholerae strain A1552

52.941

100

0.534
  comM Haemophilus influenzae Rd KW20

51.176

100

0.516
  comM Legionella pneumophila str. Paris

48.713

99.802

0.486
  comM Legionella pneumophila strain ERS1305867

48.713

99.802

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.794

100

0.451

Multiple sequence alignment