Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CFP59_RS22155 Genome accession   NZ_CP025018
Coordinates   5366698..5368440 (-) Length   580 a.a.
NCBI ID   WP_159398918.1    Uniprot ID   -
Organism   Streptomyces sp. M56     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5361698..5373440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFP59_RS22140 (CFP59_04364) - 5362534..5363346 (-) 813 WP_069873572.1 response regulator transcription factor -
  CFP59_RS22145 (CFP59_04365) - 5363674..5364543 (+) 870 WP_231981354.1 alpha/beta fold hydrolase -
  CFP59_RS22150 (CFP59_04366) rcrQ 5364624..5366582 (-) 1959 WP_100806599.1 ABC transporter ATP-binding protein Regulator
  CFP59_RS22155 (CFP59_04367) rcrP 5366698..5368440 (-) 1743 WP_159398918.1 ABC transporter ATP-binding protein Regulator
  CFP59_RS22160 - 5368562..5368837 (+) 276 WP_069873578.1 MoaD/ThiS family protein -
  CFP59_RS22165 - 5368849..5370345 (+) 1497 WP_100809269.1 hypothetical protein -
  CFP59_RS22170 (CFP59_04370) - 5370432..5371118 (+) 687 WP_069873579.1 DUF2993 domain-containing protein -
  CFP59_RS22175 (CFP59_04371) - 5371567..5372406 (+) 840 WP_100806600.1 sulfurtransferase -
  CFP59_RS22180 (CFP59_04372) - 5372438..5372725 (+) 288 WP_069873584.1 DUF1416 domain-containing protein -
  CFP59_RS22185 (CFP59_04373) - 5372918..5373175 (+) 258 WP_014053929.1 DUF3099 domain-containing protein -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 62562.78 Da        Isoelectric Point: 6.0215

>NTDB_id=216088 CFP59_RS22155 WP_159398918.1 5366698..5368440(-) (rcrP) [Streptomyces sp. M56]
MLVRLIRAYLRPYTRTITLIVLLQLVQTLATLYLPALNADIIDSGVVKGDTGYILRVGGLMIAVTFVQIVCAAGAVYFSA
RTSMALGRDVRAAVFDRVQSFSAREMGHFGAPSLITRTTNDVQQVQMVCLLAFTLMVSAPIMCVGGVVMALDQDVPLSGL
LLLIVPALGLVVTLIARRMRPLFRHVQERIDTVNRVLREQITGIRVIRAFVRDTHERDRFSAANSGLMDVSLRAGRLMSL
MFPAVMLVVNVSSVAVVWFGGHRIDSGGMQVGALTAFLSYLMQILTSVMMATFMFMMVPRAEVCAERVQEVLDTVTSVVP
PLQPVAPVPADAGRGLLELRGVEFRYPGADEPVLRDISLIARPGRTTAVIGSTGSGKSTLLGLVPRLFDATDGSVHIDGV
DVRDLDPGVMTRTVGLVPQKPYLFAGTVASNLRYGDPGATDEELWRALETAQAREFVESMEDGLDSPIAQGGTNVSGGQR
QRLAIARALVGRPSVYLFDDSFSALDYATDARLRAALVDETESATVVIVAQRVSTIRGADLIVVLDAGRIVGAGTHGELM
AGNETYREIVLSQLTEEEAA

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=216088 CFP59_RS22155 WP_159398918.1 5366698..5368440(-) (rcrP) [Streptomyces sp. M56]
GTGCTGGTACGACTGATACGGGCGTATCTGAGGCCCTATACCCGAACGATCACGCTGATCGTCTTATTGCAGTTGGTGCA
GACCCTCGCCACCCTCTACCTGCCCGCGCTGAACGCGGACATCATCGACAGCGGAGTGGTGAAGGGCGACACCGGCTACA
TCCTTCGTGTCGGCGGGCTGATGATCGCCGTCACTTTCGTCCAGATCGTCTGCGCCGCGGGAGCCGTCTACTTCAGCGCG
CGCACCTCCATGGCGCTCGGCCGCGATGTGCGCGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCGCGTGAGATGGG
CCACTTCGGGGCGCCGTCCTTGATCACCCGTACCACCAACGATGTGCAGCAGGTGCAGATGGTGTGCCTGCTGGCCTTCA
CGCTGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGTGTCGTCATGGCGCTCGACCAGGACGTTCCGCTGTCGGGGCTG
CTTCTGCTCATCGTTCCGGCCCTGGGCCTCGTCGTCACGCTCATTGCCCGCCGGATGCGGCCGCTGTTCCGCCATGTCCA
GGAGCGCATCGACACCGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCATCCGGGTGATCCGGGCCTTCGTCCGCGACA
CCCATGAGCGCGACCGCTTCAGTGCCGCCAACTCCGGGCTGATGGATGTCTCGCTGCGTGCCGGACGGCTGATGTCGCTG
ATGTTCCCCGCCGTGATGCTGGTGGTGAACGTCTCCAGCGTGGCCGTCGTCTGGTTCGGCGGGCACCGCATCGACAGCGG
TGGGATGCAGGTCGGCGCGCTGACCGCGTTCCTCAGCTATCTGATGCAGATCCTGACGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGGGCCGAGGTGTGCGCCGAGCGCGTCCAGGAAGTGCTGGACACCGTGACCAGTGTCGTACCG
CCGCTCCAGCCCGTGGCGCCCGTGCCCGCCGACGCCGGGCGGGGCCTGCTGGAGCTGCGGGGCGTGGAGTTCCGCTACCC
CGGCGCCGATGAGCCGGTGCTGCGCGACATCTCGCTGATCGCCCGGCCCGGCCGGACCACCGCCGTCATCGGCTCCACGG
GCAGCGGCAAGTCGACCCTGCTCGGGCTGGTGCCGCGGCTGTTCGACGCGACCGACGGCAGTGTTCACATCGACGGCGTG
GATGTGCGCGACCTCGACCCGGGGGTGATGACCCGGACCGTCGGGCTCGTCCCCCAGAAGCCGTATCTCTTCGCCGGCAC
GGTCGCCTCGAACCTGCGGTACGGCGACCCCGGCGCCACCGACGAGGAGCTGTGGCGGGCCCTGGAGACCGCCCAGGCGC
GGGAGTTCGTGGAGTCCATGGAGGACGGTCTGGACTCCCCGATCGCCCAGGGCGGGACCAATGTCTCCGGCGGTCAGCGG
CAGCGGCTGGCGATCGCCCGCGCCCTGGTCGGCAGGCCGTCCGTCTATCTCTTCGACGACTCCTTCTCCGCGCTCGACTA
CGCCACCGATGCCCGGCTGAGGGCGGCGCTCGTGGACGAGACGGAGAGCGCGACGGTCGTCATCGTCGCCCAGCGGGTGT
CCACCATCCGGGGCGCCGACCTGATCGTGGTGCTCGACGCGGGCCGGATCGTCGGCGCCGGTACCCACGGCGAGCTGATG
GCCGGCAACGAGACCTACCGCGAGATCGTGCTCTCCCAGCTCACCGAGGAGGAAGCGGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(354-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.13

95.172

0.372

Multiple sequence alignment