Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BXU06_RS12605 Genome accession   NZ_CP019509
Coordinates   2940761..2942257 (-) Length   498 a.a.
NCBI ID   WP_077300176.1    Uniprot ID   -
Organism   Aquaspirillum sp. LM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2935761..2947257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BXU06_RS12590 (BXU06_12660) - 2936678..2937460 (+) 783 WP_253189462.1 GntR family transcriptional regulator -
  BXU06_RS12595 (BXU06_12665) - 2937694..2938899 (-) 1206 WP_216352471.1 benzoate/H(+) symporter BenE family transporter -
  BXU06_RS12600 (BXU06_12670) - 2939216..2940703 (+) 1488 WP_171982218.1 PLP-dependent aminotransferase family protein -
  BXU06_RS12605 (BXU06_12675) comM 2940761..2942257 (-) 1497 WP_077300176.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BXU06_RS12610 (BXU06_12680) - 2942270..2942575 (-) 306 WP_077300179.1 accessory factor UbiK family protein -
  BXU06_RS12615 (BXU06_12685) glnK 2942917..2943255 (+) 339 WP_077300182.1 P-II family nitrogen regulator -
  BXU06_RS12620 (BXU06_12690) - 2943286..2944671 (+) 1386 WP_077300185.1 ammonium transporter -
  BXU06_RS12625 (BXU06_12695) - 2944940..2945266 (+) 327 WP_077300188.1 hypothetical protein -
  BXU06_RS12630 (BXU06_12700) alr 2945381..2946448 (-) 1068 WP_077300191.1 alanine racemase -
  BXU06_RS12635 (BXU06_12705) - 2946550..2947194 (+) 645 WP_077300194.1 DedA family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53189.32 Da        Isoelectric Point: 7.9403

>NTDB_id=216078 BXU06_RS12605 WP_077300176.1 2940761..2942257(-) (comM) [Aquaspirillum sp. LM1]
MSLARIHSRALAGTDAPEVTVEVHLANGLPSLTLVGLPDTEVRESRERVRAAILLAGLEFPARRITINLAPADLPKESGR
FDLPIALGILAAAGHISASLLARHEFVGELALSGELRPIRGALLMAMAASRAGRTLVLPRASAAEAALWPGASLAQADTL
LEVCAMLDGRCTLSVPPPPCMRTVRAYPDLADIKGQLAARRALEIAAAGRHSLLLSGPPGTGKSMLAARLPGILPDMGED
EALEVAAVRSLSANGLDPEQFWMRPFRSPHHSASAPALVGGGSNPRPGEISLALHGVLFLDELPEFDRKVLDMLREPLET
GRITISRAARQVDFPARFQLIAAMNPCPCGYHGHPSGRCRCSPEQISRYRLRISGPLLDRIDMRIDVPSLPAQDLQRAAP
GEASAVVRERVAHAFARQLARQGCSNAELQGSTLDQVATPDEEGAGLAALAIERFHLSGRAYHRILRLARTIADLDGDGV
AQITARHIAEAIQFRRGL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=216078 BXU06_RS12605 WP_077300176.1 2940761..2942257(-) (comM) [Aquaspirillum sp. LM1]
GTGTCACTGGCGCGCATCCATAGCCGGGCACTGGCCGGCACCGACGCCCCGGAAGTGACCGTGGAAGTCCATCTGGCCAA
CGGCTTGCCGTCGTTGACCCTGGTTGGGCTACCGGACACCGAGGTGAGGGAAAGTCGCGAGCGGGTGCGCGCCGCCATCT
TGCTGGCCGGGCTGGAGTTTCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCTGATCTCCCCAAGGAATCTGGCCGG
TTTGACCTGCCGATTGCACTGGGCATTCTGGCCGCCGCCGGGCATATCAGCGCCAGCCTGCTGGCCCGGCATGAATTTGT
TGGCGAGCTGGCGCTCAGCGGCGAATTGCGCCCGATTCGCGGCGCATTGCTGATGGCGATGGCCGCCAGCCGGGCTGGAC
GCACCCTGGTGTTGCCGCGCGCCAGCGCCGCCGAAGCCGCCTTGTGGCCAGGGGCCAGCCTGGCTCAGGCCGATACCCTG
CTGGAGGTATGCGCCATGCTGGACGGGCGCTGCACCCTGAGTGTGCCGCCACCGCCCTGCATGCGCACCGTCCGCGCCTA
CCCGGACCTGGCCGATATCAAAGGCCAGCTGGCCGCCCGGCGCGCACTGGAAATTGCCGCTGCGGGTCGCCACAGCCTGC
TGCTGTCCGGGCCGCCCGGCACGGGCAAATCCATGCTGGCTGCCCGCCTGCCCGGCATCCTGCCGGACATGGGCGAAGAC
GAAGCGCTGGAAGTGGCTGCCGTGCGCTCACTCAGCGCCAACGGCCTGGACCCGGAACAGTTCTGGATGCGACCCTTCAG
AAGCCCGCATCATTCCGCATCGGCCCCGGCGCTGGTGGGCGGGGGCAGCAATCCGCGCCCCGGAGAAATTTCCCTGGCGC
TGCACGGCGTGTTATTTCTGGACGAACTGCCCGAATTTGACCGCAAGGTGCTGGACATGCTGCGCGAACCGCTGGAAACC
GGGCGCATCACCATTTCACGCGCCGCCCGCCAGGTGGATTTTCCTGCCCGCTTTCAGTTGATAGCTGCGATGAACCCCTG
CCCCTGCGGCTACCACGGCCATCCCTCCGGGCGCTGCCGCTGCTCGCCCGAGCAGATCAGCCGCTACCGCCTGCGTATCT
CTGGCCCACTGCTTGACCGCATCGACATGCGCATCGACGTGCCCAGCCTGCCCGCACAAGACCTGCAACGCGCCGCGCCA
GGCGAAGCCAGCGCCGTGGTGCGCGAACGGGTGGCGCACGCCTTTGCCCGGCAACTGGCCCGCCAGGGCTGCAGCAATGC
CGAACTGCAAGGCAGCACCCTCGACCAGGTGGCCACCCCGGATGAAGAAGGCGCAGGCCTGGCCGCGCTGGCGATTGAGC
GCTTTCACCTGTCGGGCCGCGCCTACCACCGCATCTTGCGCCTGGCGCGCACCATTGCTGACCTGGATGGTGATGGGGTG
GCCCAGATCACGGCCAGGCATATTGCCGAGGCCATCCAGTTTCGCCGTGGCTTGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.93

99.799

0.548
  comM Vibrio campbellii strain DS40M4

53.722

99.799

0.536
  comM Glaesserella parasuis strain SC1401

52.695

100

0.53
  comM Haemophilus influenzae Rd KW20

51.896

100

0.522
  comM Legionella pneumophila str. Paris

48.303

100

0.486
  comM Legionella pneumophila strain ERS1305867

48.303

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.998

100

0.438

Multiple sequence alignment