Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PspS49_RS28640 Genome accession   NZ_CP019432
Coordinates   6431238..6432734 (+) Length   498 a.a.
NCBI ID   WP_160042315.1    Uniprot ID   A0A7Z2RGQ4
Organism   Pseudomonas sp. S49     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 6430419..6446368 6431238..6432734 within 0


Gene organization within MGE regions


Location: 6430419..6446368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS49_RS28630 (PspS49_28975) - 6430419..6430631 (-) 213 WP_224790075.1 HigA family addiction module antitoxin -
  PspS49_RS28635 (PspS49_28980) - 6430893..6431090 (+) 198 WP_160042313.1 hypothetical protein -
  PspS49_RS28640 (PspS49_28985) comM 6431238..6432734 (+) 1497 WP_160042315.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PspS49_RS28645 (PspS49_28990) - 6432905..6435061 (+) 2157 WP_160042317.1 ATP-binding domain-containing protein -
  PspS49_RS28650 (PspS49_28995) - 6435064..6435723 (+) 660 WP_160042319.1 DUF2290 domain-containing protein -
  PspS49_RS28655 (PspS49_29000) - 6435780..6437756 (-) 1977 WP_064389541.1 methyl-accepting chemotaxis protein -
  PspS49_RS28660 (PspS49_29005) - 6437939..6438859 (-) 921 WP_034152038.1 LysR substrate-binding domain-containing protein -
  PspS49_RS28665 (PspS49_29010) - 6439019..6440416 (+) 1398 WP_160042321.1 NorM family multidrug efflux MATE transporter -
  PspS49_RS28670 (PspS49_29015) - 6440524..6442197 (-) 1674 WP_160042323.1 bifunctional diguanylate cyclase/phosphodiesterase -
  PspS49_RS28675 (PspS49_29020) rep 6442460..6444469 (+) 2010 WP_127930218.1 DNA helicase Rep -
  PspS49_RS28680 (PspS49_29025) - 6444527..6445099 (+) 573 WP_007920398.1 xanthine phosphoribosyltransferase -
  PspS49_RS28685 (PspS49_29030) - 6445220..6446368 (-) 1149 WP_160042325.1 hypothetical protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53150.35 Da        Isoelectric Point: 8.1161

>NTDB_id=215770 PspS49_RS28640 WP_160042315.1 6431238..6432734(+) (comM) [Pseudomonas sp. S49]
MSLSIVHSRAQIGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAARPYPDLNEVQGQMAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
CEALEVAAIQSVASGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPQVKP
GEDSASAAALVAEARERQLKRQGCANAFLDLPGLKRHCKLSTTDEKWLESACERLTLSLRSAHRLLKVARTLADLEQCKD
ISREHLAEALQYRPSSNS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=215770 PspS49_RS28640 WP_160042315.1 6431238..6432734(+) (comM) [Pseudomonas sp. S49]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGATAGGCGTGGAAGCCCCCGCTGTCACCGTCGAAGTCCATCTGGCCAA
CGGCCTGCCGTCGCTGACCATGGTCGGCCTGCCCGAGGCGGCGGTGAAGGAGAGCAAGGATCGGGTGCGCAGCGCCATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACCTTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTTGATCTGGCGATTGCCTTGGGGATTCTGTCGGCGAGTGTGCAGGTGCCGTGTCTGACGCTGGACGATGTGGAATGTCT
GGGTGAGTTGGCGTTGTCCGGCGCAGTAAGGGCGGTGCGCGGGGTGTTGCCGGCAGCGTTGGCCGCGCGCAAGGCGGGTC
GTGCGCTGGTGGTGCCGCGGGCGAATGCCGAGGAGGCGTGCCTGGCTTCGGGGTTGAAGGTGTTTGCGGTGGATCATTTG
CTGGAGGCGGTGGCGCATTTCAATGGGCATACACCGGTGGAGCCCTACGTATCGGACGGTTTGATCCATGCCGCCAGACC
CTATCCCGACCTCAATGAAGTACAAGGGCAGATGGCCGCCAAACGAGCGTTGCTGATTGCCGCAGCGGGTGCGCATAACC
TGCTGTTCAGCGGGCCGCCGGGGACAGGCAAGACGCTGCTGGCCAGTCGACTGCCGGGGCTACTGCCACCTTTGTCCGAA
TGCGAAGCGCTGGAGGTGGCGGCGATTCAATCCGTCGCCAGTGGCGTGCCACTGACCCATTGGCCCCAGCGCCCCTTTCG
CCAGCCGCATCACTCGGCGTCAGGCCCTGCACTGGTCGGCGGCAGTTCGAAACCACAACCCGGCGAGATCACCCTCGCCC
ACCACGGCGTGCTTTTTCTAGACGAGTTGCCGGAGTTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCC
GGGCATATCGTGATTGCCCGGGCGAAGGATCGCGTGCGTTTCCCGGCGCGGTTTCAGTTGGTGGCGGCGATGAACCCGTG
TCCCTGTGGATATCTTGGTGAGCCGAGTGGCAAATGCTCGTGCACGCCTGACATGGTGCAGCGCTATCGCAACAAGCTCT
CGGGGCCGTTACTGGACCGGATCGATTTGCACCTTACGGTGGCGCGGGAAGCGACGGCGTTGAACCCGCAAGTGAAACCG
GGAGAGGACAGCGCCAGCGCCGCGGCGTTGGTGGCCGAGGCGCGTGAGCGGCAGCTGAAGCGTCAAGGCTGCGCCAATGC
ATTTCTCGATCTGCCGGGTTTGAAGCGGCACTGCAAGTTATCCACAACCGATGAGAAATGGCTGGAGTCAGCCTGTGAAC
GGCTGACGTTGTCGCTGCGCTCGGCGCATCGGTTATTGAAGGTGGCAAGGACGTTGGCGGATCTTGAACAGTGCAAAGAC
ATCAGCCGTGAGCATTTGGCTGAGGCGTTGCAGTATCGGCCCTCGAGCAACAGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2RGQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.398

0.544
  comM Vibrio campbellii strain DS40M4

54.545

99.398

0.542
  comM Glaesserella parasuis strain SC1401

53

100

0.532
  comM Haemophilus influenzae Rd KW20

53

100

0.532
  comM Legionella pneumophila str. Paris

50.602

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.602

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.6

100

0.458

Multiple sequence alignment