Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BRW84_RS03240 Genome accession   NZ_CP019430
Coordinates   695432..695908 (+) Length   158 a.a.
NCBI ID   WP_005881460.1    Uniprot ID   C3XAY9
Organism   Oxalobacter formigenes OXCC13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 690432..700908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRW84_RS03235 (BRW84_03240) uvrA 692301..695165 (-) 2865 WP_005881462.1 excinuclease ABC subunit UvrA -
  BRW84_RS03240 (BRW84_03245) ssb 695432..695908 (+) 477 WP_005881460.1 single-stranded DNA-binding protein Machinery gene
  BRW84_RS03245 (BRW84_03250) - 696151..697326 (+) 1176 WP_005881457.1 SIR2 family protein -
  BRW84_RS03250 (BRW84_03255) - 697334..698530 (-) 1197 WP_005881455.1 MFS transporter -
  BRW84_RS03255 (BRW84_03260) - 698872..699822 (+) 951 WP_005881453.1 ZIP family metal transporter -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17798.79 Da        Isoelectric Point: 7.0191

>NTDB_id=215713 BRW84_RS03240 WP_005881460.1 695432..695908(+) (ssb) [Oxalobacter formigenes OXCC13]
MASINKVIIVGNLGRDPENRYLPSGEQVTSIAVATTDRWRDKASGEQKEQTEWHRISFFGKLAEIAGQYLKKGSQVYIEG
RLRTRKYTDKEGIDRYATEIIADTMQMLGSRQGAGEPPEERGSYQPPSRPAQNTQQQRPQQSNRPAGLSPDMDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=215713 BRW84_RS03240 WP_005881460.1 695432..695908(+) (ssb) [Oxalobacter formigenes OXCC13]
ATGGCGTCGATCAACAAGGTTATCATTGTCGGTAATCTCGGCCGCGATCCGGAAAATCGCTATCTGCCAAGTGGTGAACA
GGTCACCAGTATCGCTGTAGCCACGACCGATCGGTGGCGTGACAAAGCCTCGGGCGAGCAGAAAGAACAGACCGAATGGC
ACCGTATTTCCTTCTTCGGCAAACTGGCTGAAATTGCAGGCCAGTACCTGAAAAAGGGTTCGCAGGTCTACATTGAAGGA
CGCCTGAGAACACGCAAATACACCGACAAGGAAGGCATCGACCGTTACGCGACCGAAATCATCGCCGATACCATGCAAAT
GCTCGGCAGCCGTCAGGGTGCCGGTGAGCCGCCGGAAGAACGTGGCAGCTATCAGCCGCCATCCCGTCCGGCACAGAACA
CCCAGCAGCAACGTCCGCAACAGAGCAACCGGCCAGCCGGATTGTCACCGGATATGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C3XAY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.237

100

0.608
  ssb Glaesserella parasuis strain SC1401

47.778

100

0.544
  ssb Neisseria meningitidis MC58

46.369

100

0.525
  ssb Neisseria gonorrhoeae MS11

47.126

100

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

33.143

100

0.367

Multiple sequence alignment